| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,441,419 – 8,441,528 |
| Length | 109 |
| Max. P | 0.982700 |
| Location | 8,441,419 – 8,441,528 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 76.10 |
| Mean single sequence MFE | -43.18 |
| Consensus MFE | -24.45 |
| Energy contribution | -25.62 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.57 |
| SVM decision value | 1.92 |
| SVM RNA-class probability | 0.982700 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8441419 109 - 22224390 GAAGCGUUCAGCUGCAGCUGCAGAAAUUUCGAUAAAGCCGUCUUCU---UCGUGCUCUGCAACAGUUCCGGUUGCAGCGUAAAGUUCUCGUAGUUGUAGGCUAAUCCUCCUC-- (.((.(((.((((((((((((((((....(((..(((....)))..---)))(((.(((((((.......))))))).)))...)))).))))))))).)))))).)).)..-- ( -33.10) >DroPse_CAF1 4466 111 - 1 GAGGCGUUCAGCUGCAGCUGCAGGAACUUGGACAUGACCGUCUUUC---GGCUGGUCUGCAGCAGCUCUGGCUGCAGCGUAAAGUUCUUGUAGGUGUAGGUGUAUGCCCCCGCC ..(((((.((.(((((.((((((((((((..((..(((((((....---))).)))).((.(((((....))))).)))).)))))))))))).))))).)).)))))...... ( -56.50) >DroSec_CAF1 8759 109 - 1 GAAGCGUUCAGCUGCAGCUGCAGAAAUUUCGAUAAAGCUGUCUUCU---UCGUGCUCUGCAACAGUUCCGGUUGCAGCGUAAAGUUCUCGUAGUUGUAGGCUAAUCCUCCUC-- (.((.(((.((((((((((((((((....(((..(((....)))..---)))(((.(((((((.......))))))).)))...)))).))))))))).)))))).)).)..-- ( -33.10) >DroMoj_CAF1 93845 105 - 1 GAGGCGUUCAGCUGAAGCUGCAGGAACUGCGACAGCGCCGUCUUCU---UGGUGCUCUGCAGCAGCUCCGGCCUUAGCGUGAAGUUCUUGUACACGUAGCUGGAGGCG------ ...((.((((((((....(((((((((((((..(((((((......---))))))).)))....(((........)))....))))))))))....)))))))).)).------ ( -43.20) >DroAna_CAF1 2721 100 - 1 GAGGCGUUCAGCUGCAUCUGCAGGAACUUCGAGAGCGCCGUCUUCUUAUUCGUGCUCUGCAACAGCUCCGGCUGCAGAGUAAAGUUCUCGUAGCUGAAG------------C-- ...((.(((((((((.((.....)).....((((((..((..........))(((((((((...((....)))))))))))..))))))))))))))))------------)-- ( -36.50) >DroPer_CAF1 3710 111 - 1 GAGGCGUUCAGCUGCAGCUGCAGGAACUUGGACAUGGUCGUCUUUC---GGCUGGUCUGCAGCAGCUCUGGCUGCAGCGUAAAGUUCUUGUAGGUGUAGGUGUAUGCCCCCGCC ..(((((.((.(((((.((((((((((((((((.((((((.....)---)))))))))((.(((((....))))).))...)))))))))))).))))).)).)))))...... ( -56.70) >consensus GAGGCGUUCAGCUGCAGCUGCAGGAACUUCGACAAAGCCGUCUUCU___UCGUGCUCUGCAACAGCUCCGGCUGCAGCGUAAAGUUCUCGUAGGUGUAGGUGAAUGCCCC_C__ ...........(((((.((((.(((((((.(((......)))..........(((.(((((((.......))))))).)))))))))).)))).)))))............... (-24.45 = -25.62 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:10 2006