Locus 318

Sequence ID X_DroMel_CAF1
Location 1,004,020 – 1,004,126
Length 106
Max. P 0.915728
window482

overview

Window 2

Location 1,004,020 – 1,004,126
Length 106
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 78.13
Mean single sequence MFE -21.96
Consensus MFE -12.92
Energy contribution -13.56
Covariance contribution 0.64
Combinations/Pair 1.17
Mean z-score -2.11
Structure conservation index 0.59
SVM decision value 1.10
SVM RNA-class probability 0.915728
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1004020 106 + 22224390
UCCGACUCAUAAGCUAUCAAAGUCUGGGUUAAUUUUU-GGCCUCGUCUCUCCUGAAGGUC-----UUCCGCUCGCUCACUGAGCUCCU--------CAUUUGUCCCCCUGUGGCCCACCU
...((((.............))))(((((((......-(((((..((......)))))))-----....(((((.....)))))....--------..............)))))))... ( -21.52)
>DroSec_CAF1 89500 104 + 1
UCCGACUCAUAAUCUUUC---CUCUGGGUUAAUUUUUAGGCCUCUUCUCUCCUGAAGGUC-----UUCCGCUCGCUCACUGAGCUCCU--------CAUUUGUCCCCCUGUGGCCUACCU
...((((((.........---...))))))......(((((((((((......)))))..-----....(((((.....)))))....--------...............))))))... ( -22.60)
>DroSim_CAF1 66688 104 + 1
UCCGACUCAUAAUCUUUC---CUCUGGGUUAAUUUUUAGGCCUCUUCUCUCCUGAAGGUC-----UUCCGCUCGCUCACUGAGCUCCU--------CAUUUGUCCCCCUGUGGCCUACCU
...((((((.........---...))))))......(((((((((((......)))))..-----....(((((.....)))))....--------...............))))))... ( -22.60)
>DroEre_CAF1 98512 114 + 1
UCCGACUCAUAAGCUAUCAAACUCAGGGUUCACUUGUAGGCCUCUUCUCUCCUGAAGGUC-----UUCCGCUCGCUCACUAAGCUGCUCAUUUCCUCAUUUGUCCCCCUAUGGGACACC-
...(((...............((((((.....)))).))....((((......)))))))-----....((..(((.....))).)).............((((((.....))))))..- ( -22.20)
>DroYak_CAF1 92101 104 + 1
----------------UUAAACUCAGGGUUCAUCUGUAGGCCUCUUCUCACCUGAAGGUCUGCUCUUCCGCUCGCUCACUAAGCUCCUCAUCUCCCCAUUUAUCCCCCUGUAACCCACCU
----------------.........(((((((...((((((((..((......))))))))))..........(((.....)))........................)).))))).... ( -20.90)
>consensus
UCCGACUCAUAAGCUAUCAAACUCUGGGUUAAUUUUUAGGCCUCUUCUCUCCUGAAGGUC_____UUCCGCUCGCUCACUGAGCUCCU________CAUUUGUCCCCCUGUGGCCCACCU
.........................((((((.......(((((..((......))))))).........(((((.....)))))..........................)))))).... (-12.92 = -13.56 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:35 2006