Locus 3176

Sequence ID X_DroMel_CAF1
Location 8,435,380 – 8,435,500
Length 120
Max. P 0.905782
window5211

overview

Window 1

Location 8,435,380 – 8,435,500
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 83.06
Mean single sequence MFE -51.14
Consensus MFE -33.10
Energy contribution -33.33
Covariance contribution 0.23
Combinations/Pair 1.12
Mean z-score -2.70
Structure conservation index 0.65
SVM decision value 1.04
SVM RNA-class probability 0.905782
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8435380 120 - 22224390
GGUGCUUGAGCACCACCAUGGUGGCCAGGGUUUUUAGAGUGGGCUCAAAGUCGAGCACAUGCAGAUCGCUGUAGUCGAUAAGCGCCACACCGGGCGGAACAACUCCGCCAGCCGCUGCGG
(((((....))))).((..((((((...(((.......(((((((....(((((..(((.((.....)))))..))))).))).))))))).((((((.....)))))).))))))..)) ( -50.71)
>DroEre_CAF1 995 120 - 1
GGUGCUUAAGCACCACCAUGGUGGCCAGGGUUUUCAGAGUGGGCUCAAAGUCGAGCACAUGCAGAUCGCUGUAGUCGAUGAGCGCCACACCGGGAGGCACAACUCCGCCAGCCGCCGUGG
(((((....))))).((((((((((...(((.......(((((((((...((((..(((.((.....)))))..))))))))).))))....((((......))))))).)))))))))) ( -59.20)
>DroAna_CAF1 7300 120 - 1
GAUACUUCAGCACCACCAUGGUGGCCAAUGUUUUCAGUGUGGGCUCAAAGUCGAGCACAUGCAGAUCGCUGUAAUCAAUCAAAACUACGCUGGAUGCAGCUGCUCCACCCGCGGCUGCCG
........((((((((....))))....))))((((((((((((((......))))...(((((....)))))...........)))))))))).((((((((.......)))))))).. ( -43.50)
>consensus
GGUGCUUAAGCACCACCAUGGUGGCCAGGGUUUUCAGAGUGGGCUCAAAGUCGAGCACAUGCAGAUCGCUGUAGUCGAUAAGCGCCACACCGGGAGGAACAACUCCGCCAGCCGCUGCGG
(((((....))))).((.(((((((.............((((((((......))))...(((((....)))))...........))))..((((.(......)))))...))))))).)) (-33.10 = -33.33 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:02 2006