Locus 3175

Sequence ID X_DroMel_CAF1
Location 8,430,421 – 8,430,524
Length 103
Max. P 0.897774
window5210

overview

Window 0

Location 8,430,421 – 8,430,524
Length 103
Sequences 3
Columns 103
Reading direction reverse
Mean pairwise identity 93.49
Mean single sequence MFE -12.83
Consensus MFE -12.55
Energy contribution -12.33
Covariance contribution -0.22
Combinations/Pair 1.07
Mean z-score -1.88
Structure conservation index 0.98
SVM decision value 1.00
SVM RNA-class probability 0.897774
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8430421 103 - 22224390
UUUUAUUUUAUUUCGCUUUUUUACAUAUCCGUUCUUUGUUUUUCAAUACUCUGAAGUGCACAACACUUUUUGUGUACAUAUUUAAUGCGUUCUGUUUUUUUUU
.............(((....(((.((((.............((((......))))((((((((......)))))))))))).))).))).............. ( -13.90)
>DroSec_CAF1 16157 101 - 1
AUUUAUUUUAUUUCGCUUUUUUACAUAUCCGUUCUUGGUUUUUCAAUACUCUGAAGUGCACAACACUUUUUGUGUAUAAAUUUAAUGCGUUCU--UCUUGUUU
.............(((...............(((..(((........)))..)))((((((((......)))))))).........)))....--........ ( -13.00)
>DroSim_CAF1 13853 101 - 1
AUUUAUUUUAUUUCGCUUUUUUACAUAUCCGUUCUUUUGUUUUCAAUACUCUGAAGUGCACAACACUUUUUGUGUAUAUAUUUAAUGCGUUCU--UUUUGUUU
.............(((....(((.((((.............((((......))))((((((((......)))))))))))).))).)))....--........ ( -11.60)
>consensus
AUUUAUUUUAUUUCGCUUUUUUACAUAUCCGUUCUUUGUUUUUCAAUACUCUGAAGUGCACAACACUUUUUGUGUAUAUAUUUAAUGCGUUCU__UUUUGUUU
.............(((.........................((((......))))((((((((......)))))))).........))).............. (-12.55 = -12.33 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:01 2006