Locus 3174

Sequence ID X_DroMel_CAF1
Location 8,426,545 – 8,426,665
Length 120
Max. P 0.861527
window5209

overview

Window 9

Location 8,426,545 – 8,426,665
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 77.75
Mean single sequence MFE -31.73
Consensus MFE -23.17
Energy contribution -22.40
Covariance contribution -0.77
Combinations/Pair 1.14
Mean z-score -1.66
Structure conservation index 0.73
SVM decision value 0.83
SVM RNA-class probability 0.861527
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8426545 120 + 22224390
AAAAGAAAAUAUAAAAAAUGUGGCAAACAGGAAAUUGCCGGCGAAAAGUGUCUACAUAUGACAGUUUCAUGUGUGGGCCCACGGACAACCCACUUUCUGGCUGAGUUUGCCCGGUUUGGU
...........((((...((.(((((((.((......))(((.((((((((((((((((((.....))))))))))))....((.....))))))).).)))..))))))))).)))).. ( -35.70)
>DroEre_CAF1 11392 105 + 1
---------------AAAAGUGGCAAACAGGAAAUUGUUGGCGAAAAGUGUCUACAUAUGACAAUCUCAUGUGUGGGCCCACAGACAAUCCACUUUCUGGCUGAGUUUGCCCGGUUUGGU
---------------....(.(((((((.(((..(((((.((.....))((((((((((((.....)))))))))))).....))))))))....((.....))))))))))........ ( -31.50)
>DroYak_CAF1 8577 96 + 1
--------------UAAAAGUGGCAAACAGGAAAUGGCUGGCGAAAAGUGUCUACAUAUGACAAUUUCGUGUGUGGGCCCACAGACAACCCAUUUUCCGGCUG----------GCUUGCU
--------------.......(((((.(((((((((((((((.....))((((((((((((.....))))))))))))...))).....)))))))....)))----------..))))) ( -28.00)
>consensus
_______________AAAAGUGGCAAACAGGAAAUUGCUGGCGAAAAGUGUCUACAUAUGACAAUUUCAUGUGUGGGCCCACAGACAACCCACUUUCUGGCUGAGUUUGCCCGGUUUGGU
.....................(((.....(((((((((((((.....))((((((((((((.....))))))))))))...))).))).....))))).))).................. (-23.17 = -22.40 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:00 2006