Locus 3173

Sequence ID X_DroMel_CAF1
Location 8,425,982 – 8,426,079
Length 97
Max. P 0.966556
window5208

overview

Window 8

Location 8,425,982 – 8,426,079
Length 97
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 78.44
Mean single sequence MFE -21.59
Consensus MFE -18.39
Energy contribution -18.07
Covariance contribution -0.33
Combinations/Pair 1.12
Mean z-score -1.73
Structure conservation index 0.85
SVM decision value 1.60
SVM RNA-class probability 0.966556
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8425982 97 + 22224390
GACUAUGAAAAUGUCCAGAGAUUCGGUUUGACUGUAGAUACAGUUUAUUUACAGCUCGAUGGGGCAAGAUGCAGACAAACGUAUCUACAUAUCUACA
((.((((....(((((.(((.........((((((....)))))).........)))....)))))((((((........)))))).)))))).... ( -24.07)
>DroSec_CAF1 11840 75 + 1
GACUAUGAAAAUGUCCAGAGAUUCGAUUUGACUGUAGAUACGGUUUAUUUACAGCUCGAUGGGGCAAGGCAUAG----------------------C
..(((((....(((((......((((...(.(((((((((.....))))))))))))))..)))))...)))))----------------------. ( -21.10)
>DroSim_CAF1 9521 75 + 1
GACUAUGAAAAUGUCCAGAGAUUCGAUUUGACUGUAGAUACGGUUUAUUUACAGCUCGAUGGGGCAAGACGUAG----------------------C
..(((((....(((((......((((...(.(((((((((.....))))))))))))))..)))))...)))))----------------------. ( -19.60)
>consensus
GACUAUGAAAAUGUCCAGAGAUUCGAUUUGACUGUAGAUACGGUUUAUUUACAGCUCGAUGGGGCAAGACGUAG______________________C
..(((((....(((((......((((...(.(((((((((.....))))))))))))))..)))))...)))))....................... (-18.39 = -18.07 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:59 2006