Locus 3172

Sequence ID X_DroMel_CAF1
Location 8,424,017 – 8,424,115
Length 98
Max. P 0.991516
window5207

overview

Window 7

Location 8,424,017 – 8,424,115
Length 98
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 87.64
Mean single sequence MFE -22.32
Consensus MFE -19.66
Energy contribution -19.10
Covariance contribution -0.56
Combinations/Pair 1.17
Mean z-score -2.20
Structure conservation index 0.88
SVM decision value 2.27
SVM RNA-class probability 0.991516
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8424017 98 + 22224390
CCGUGGCCAUAAAACUGUCCGACUGGCUGGUCAUAUUGCCAAGUUGCUCUAAUUUAUGGAGCACCACCAAAUCCACCCAAACC---------------------CACCAACCACCACG-G
((((((..............(((((((..........))).))))((((((.....)))))).....................---------------------.........)))))-) ( -23.60)
>DroSec_CAF1 9895 98 + 1
CCGUGGCCAUAAAACUGUCAGACUGGCUGAUCAUAUUGCCAAGUUGCUCUAAUUUAUGGAGCACCACCAAAUCCACCCAAACC---------------------CACCAACCAUUACG-G
(((((((.(((.....(((((.....)))))..))).)))..(.(((((((.....))))))).)..................---------------------...........)))-) ( -20.60)
>DroSim_CAF1 7603 98 + 1
CCGUGGCCAUAAAACUGUCAGACUGGCUGGUCAUAUUGCCAAGUUGCUCUAAUUUAUGGAGCACCACCAAAUCCACCCAAACC---------------------CACCAACCACCACG-G
((((((..............(((((((..........))).))))((((((.....)))))).....................---------------------.........)))))-) ( -23.60)
>DroEre_CAF1 8857 97 + 1
CCGUGGCCAUAAAACUGUCCGACUGGCUAGUCAUAUUGCCAAGUUGCUCUAAUUUAUGGAGCACCACCAAAUCCACUCAAACC----------------------ACCAACCACCAUG-G
((((((..............(((((((..........))).))))((((((.....)))))).....................----------------------........)))))-) ( -21.80)
>DroYak_CAF1 5992 120 + 1
CCGUGGUCAUAAAACUGUCCGACUGGCUGGUCAUAUUGCCAAGUUGCUCUAAUUUAUGGAGCACCACCAAAUCCACCCAAACCAACAUUCAAACCACCCAAAACCAGCAACCACCAUGCG
..(((((.............(((((((..........))).))))((((((.....))))))))))).......................................(((.......))). ( -22.00)
>consensus
CCGUGGCCAUAAAACUGUCCGACUGGCUGGUCAUAUUGCCAAGUUGCUCUAAUUUAUGGAGCACCACCAAAUCCACCCAAACC_____________________CACCAACCACCACG_G
.(((((..............(((((((..........))).))))((((((.....))))))...................................................))))).. (-19.66 = -19.10 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:59 2006