| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,001,236 – 1,001,330 |
| Length | 94 |
| Max. P | 0.740981 |
| Location | 1,001,236 – 1,001,330 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 81.82 |
| Mean single sequence MFE | -15.80 |
| Consensus MFE | -10.20 |
| Energy contribution | -11.20 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.740981 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1001236 94 + 22224390 UGACCACCACCUUGUCAGACGCGAUUUCCCCAUCCGGCGAACUUGGCAACCUGGCAACUAUCGCAUCCCAUCCCAAUAUUUCACUUCUAUUUCA ((((.........))))((.(((((....(((....((.......))....))).....))))).))........................... ( -12.70) >DroEre_CAF1 97151 82 + 1 UGACCUCCACCUUGUCAGCCGCAAUUUCCCCAUCCGGGGAUCUUGGCCACUUGGCAAGCAUCCCAUCCC-----AAUAUUUCACCUC------- ..........(((((((((((.....(((((....)))))...))))....)))))))...........-----.............------- ( -20.10) >DroYak_CAF1 90340 87 + 1 UGACCUCCACCUUGUCAGCCGCGAUUUCCCCAUCCGGUGAUCUUGGCAACUUGGCAACCAUCCCAUCCCAUCCAAAUAUUUCACCUU------- ...........((((((((((.((((.((......)).)))).))))....))))))..............................------- ( -14.60) >consensus UGACCUCCACCUUGUCAGCCGCGAUUUCCCCAUCCGGCGAUCUUGGCAACUUGGCAACCAUCCCAUCCCAUCC_AAUAUUUCACCUC_______ ...........((((((((((.(((..((......))..))).))))....))))))..................................... (-10.20 = -11.20 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:33 2006