| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,416,933 – 8,417,046 |
| Length | 113 |
| Max. P | 0.906117 |
| Location | 8,416,933 – 8,417,046 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 71.72 |
| Mean single sequence MFE | -50.27 |
| Consensus MFE | -17.79 |
| Energy contribution | -18.10 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.35 |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.906117 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8416933 113 + 22224390 CUUUAGCAGCUGAGCGGAGGAUAGACCGGCGAAGCUGGUCUGCCCAUAACCAAUGGCCGUGACCAGCGUGUUGGUCACCUCCUUCUGCGUCCAAAUGCAAGUGGGCUUCAGU-U------ .......((((((((((((((..((((((((..(((((((((.((((.....)))).)).))))))).))))))))...))).)))))(((((........))))).)))))-)------ ( -50.60) >DroVir_CAF1 18212 113 + 1 CUUGAGCAGCUGCGACGAGGAGAGGCCCGCGAAACGUAUCUGUCCAUAGCCAAUGGCUGUUAGAUCUGUCUCUGCCAGCUGGGGACGGGCCCAAAGACAGGCAAUGCGCAGA-C------ .........(((((.((.(((.(((..((.....))..))).)))...(((...(((((.((((......)))).)))))(((......))).......)))..))))))).-.------ ( -36.80) >DroPse_CAF1 9067 119 + 1 CUUCAGCAGCUGGGACGAGGAGAGGCCAGCAAAACGCGUCUGGCCAUAGCCAAUGGCCAUCAGCUCUGUGUCGGCCAGCUCCUGCUGGUCCCACAGACAGGUGGGACGCAGG-GAAGGCG ((((...((((((((((.((((.(((((((.....))...((((....)))).))))).....)))).))))..))))))(((((..(((((((......))))))))))))-))))... ( -56.80) >DroYak_CAF1 10988 113 + 1 CUUCAGAAGCUGGGCGGAGGAUAGACCGGCGAAGCUGGUCUGCCCAUAGCCAAUGGCCGUGACCAGCGAGUUGGUGAGCUCCUUCUGCGUCCAAAUGCAGCUGGGCUUCAGU-G------ .....((((((.(((((((((...((((((...(((((((((.((((.....)))).)).)))))))..))))))....))))))(((((....)))))))).))))))...-.------ ( -53.30) >DroAna_CAF1 16977 113 + 1 CUUCAGCAGCUGGGCGGAGGAGAGACCGGCGAAGCUUGUCUGGCCAUAACCGAUGGCCGUAACCUGGGAGUUGGUCAACUCCGGCUGUUGCCAAAGGCACACGGGCUUCAGC-U------ ....(((.(((((.(......)...)))))(((((((((..((((((.....))))))((..(((.((((((....))))))(((....)))..))).))))))))))).))-)------ ( -48.90) >DroPer_CAF1 19310 120 + 1 CUUCAGCAGCUGGGACGAGGAGAGGCCAGCAAAACGCGUCUGGCCAUAGCCAAUGGCCAUCAGCUCAGAGUCGGCCAGCUCCUGCUGGUCCCACAGACAGGUGGGACGCAGGGGAAGGCG ((((...(((((((((...(((.(((((((.....))...((((....)))).))))).....)))...)))..))))))(((((..(((((((......)))))))))))).))))... ( -55.20) >consensus CUUCAGCAGCUGGGACGAGGAGAGACCGGCGAAACGCGUCUGGCCAUAGCCAAUGGCCGUCACCUCCGAGUCGGCCAGCUCCUGCUGGGCCCAAAGACAGGUGGGCCGCAGG_G______ ..........((((((..((..((((.((.....)).))))..))........((((((............))))))..........))))))........................... (-17.79 = -18.10 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:54 2006