Locus 3167

Sequence ID X_DroMel_CAF1
Location 8,405,349 – 8,405,467
Length 118
Max. P 0.622004
window5201

overview

Window 1

Location 8,405,349 – 8,405,467
Length 118
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 85.23
Mean single sequence MFE -30.73
Consensus MFE -24.76
Energy contribution -24.95
Covariance contribution 0.19
Combinations/Pair 1.15
Mean z-score -1.53
Structure conservation index 0.81
SVM decision value 0.18
SVM RNA-class probability 0.622004
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8405349 118 + 22224390
GGAAUUCCUCGCUGUUUCAUCAUUGCCUUCGCUAGGCGACGAAUGGGAAAGUAAGGGCACGGGCAAAAACUCCCUCUUGCUCAUCACA--UAUGAGUAACUGGUGAAUCAGUGAUGACGA
.....((.((((((.(((((((((((((.....)))))).....((((..((....((....))....))))))..((((((((....--.)))))))).))))))).)))))).))... ( -36.60)
>DroSim_CAF1 7657 117 + 1
GGAAUUCCUCGCUGUUUCAUCAUUGCCUUCGCCAGCCGACGAAUGGGAAUGCAAG-ACACAGACAAAAACUCCCUCUUGCUCACCACG--UAUGAGUAGCUGGUGAAUCAGUGAUGACGA
((....))........(((((((((..(((((((((..((..(((((...(((((-(...((.......))...))))))...)).))--)....)).))))))))).)))))))))... ( -36.80)
>DroEre_CAF1 8027 119 + 1
AGAAUUCCUCAAUCUUUCAUCAAAGCCUCUGCCAGUCGACGAAUGGGAAAGCAAA-ACACAACAAAAAACUCUCUCUUGCUCUCAAAAUACAUGAGUAACUGGUGAAUCAGUGAUGACGA
................((((((..(..((.((((((..((..(((.((.(((((.-....................))))).))......)))..)).))))))))..)..))))))... ( -22.10)
>DroYak_CAF1 7655 117 + 1
AGAAUUCCUCACCUUUUCAUCAUUGCCUGCGCCAGCCGACGAAUGGGAAAGCAAA-ACACAAACAAAAACUCUCUCUUGCUCACCACU--UAUGAGUAACUGGUGAAUCAGUGAUGACGA
................(((((((((....((((((.........((((.((....-.............)).))))(((((((.....--..)))))))))))))...)))))))))... ( -27.43)
>consensus
AGAAUUCCUCACUGUUUCAUCAUUGCCUUCGCCAGCCGACGAAUGGGAAAGCAAA_ACACAAACAAAAACUCCCUCUUGCUCACCACA__UAUGAGUAACUGGUGAAUCAGUGAUGACGA
................(((((((((..((((((((.........((((......................))))..((((((...........)))))))))))))).)))))))))... (-24.76 = -24.95 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:53 2006