Locus 3165

Sequence ID X_DroMel_CAF1
Location 8,404,459 – 8,404,564
Length 105
Max. P 0.938283
window5197

overview

Window 7

Location 8,404,459 – 8,404,564
Length 105
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 84.72
Mean single sequence MFE -32.33
Consensus MFE -26.85
Energy contribution -26.35
Covariance contribution -0.50
Combinations/Pair 1.22
Mean z-score -2.12
Structure conservation index 0.83
SVM decision value 1.27
SVM RNA-class probability 0.938283
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8404459 105 - 22224390
GAAAAAGUCUUAUUCAAAGCCAUGAGAUGCGUUAAGAAUUGCGCAGCCAAAAAGAAGGGCAAGGUAGAUGAUGACCCCUUGUCCGUUUUGAGCGUGGA---------------GAAAUCA
......(((((((........)))))))((((........)))).(((((((....((((((((............)))))))).))))).))...((---------------....)). ( -28.90)
>DroSec_CAF1 3653 120 - 1
GAAAAAGUCUUAUCCAAAGCCAUGAGAUGCGUAAAGAAUUGCGCAGCUAAAAAGAAGGGCAAGGUAGAUGAAGACCCCUUGUCCUUUUUGAACGUGGAGAUGAACGGCGUACAGAAAUCU
......((((((((.....(((((((.(((((((....))))))).))...(((((((((((((............)))))))))))))...))))).)))))..)))............ ( -35.60)
>DroEre_CAF1 7101 120 - 1
GAAAAAGUAUUAUCCAAAGCCAUGAGAUGUGUUAAGAAUUGCGCAGCCAAGAAGAAGGGCAGGGUAGAUGAUGACCCCCUGUCUUUUUUGAACGUGGAGAUGAACGAUGGGCAGAAAUGA
......((.(((((.....(((((...(((((........)))))......(((((((((((((............)))))))))))))...))))).)))))))......((....)). ( -30.60)
>DroYak_CAF1 6751 120 - 1
GAAAAAGCAUUAUCCAAAGCCAUGAGAUGCGUUAAGAAUUGCGCGGCCAAGAAGAAGGGCAGGGUAGAUGAUGACCCCUUGGCCUUUUUGAACGUGGAGAUGAACGAUGAGCUGAAAUCA
((...(((.(((((((...(((((....((((........))))(((((((..(.....).((((........)))))))))))........)))))...))...))))))))....)). ( -34.20)
>consensus
GAAAAAGUAUUAUCCAAAGCCAUGAGAUGCGUUAAGAAUUGCGCAGCCAAAAAGAAGGGCAAGGUAGAUGAUGACCCCUUGUCCUUUUUGAACGUGGAGAUGAACGAUG_GCAGAAAUCA
...................(((((...(((((........)))))......(((((((((((((............)))))))))))))...)))))....................... (-26.85 = -26.35 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:49 2006