Locus 316

Sequence ID X_DroMel_CAF1
Location 995,812 – 995,929
Length 117
Max. P 0.996687
window480

overview

Window 0

Location 995,812 – 995,929
Length 117
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 96.58
Mean single sequence MFE -40.56
Consensus MFE -35.68
Energy contribution -36.00
Covariance contribution 0.32
Combinations/Pair 1.05
Mean z-score -2.33
Structure conservation index 0.88
SVM decision value 2.73
SVM RNA-class probability 0.996687
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 995812 117 + 22224390
CCACUUAAAGCCAAGCCCGAAUCGGAAUUGGAGUCAGUCAAUGGUAUUUUAAUAGAGGCUAAUGGGCAUUUUAAUUGCUGGGCAAGGCCGCAAAAUGGGUGGCCACACGUGGGUGGG
(((((((..(((.((((((...)))(((((((((..(((..((((.(((....))).))))...))))))))))))))).)))..((((((.......)))))).....))))))). ( -38.40)
>DroSec_CAF1 78367 117 + 1
CCACUUAAAGCCAAGCCCGAAUUGGAAUUGGAGCCAGUCAAUGGUAUUUUAAUAGAGGCUAAUGGGCAUUUUAAUUGCUGGGCAAGGCCGCAAAAUGGGUGGCCACACGUGGGUGGG
(((((((..(((.(((((..((((((((....((((.....)))))))))))).).))))....((((.......)))).)))..((((((.......)))))).....))))))). ( -41.40)
>DroSim_CAF1 57868 117 + 1
CCACUUAAAGCCAAGCCCGAAUUGGAAUUGGAGCCAGUCAAUGGUAUUUUAAUAGAGGCUAAUGGGCAUUUUAAUUGCUGGGCAAGGCCGCAAAAUGGGUGGCCACACGUGGGUGGG
(((((((..(((.(((((..((((((((....((((.....)))))))))))).).))))....((((.......)))).)))..((((((.......)))))).....))))))). ( -41.40)
>DroEre_CAF1 91881 117 + 1
CCACUUAAAGCCGAGCCCGAAUUGGAAUUGGAGUCAGUCAAUGGUAUUUUAAUAGAGGCUAAUGGCCAUUUUAAUUGCUGGGCAAGGCCGCAAAAUGGGCGGACACACGUGGGUGGG
(((((((..(((..(((((....(.(((((((((..((((.((((.(((....))).)))).)))).))))))))).))))))..)))(((.......)))........))))))). ( -37.10)
>DroYak_CAF1 84880 117 + 1
CCACUUAAAGCCGAGCCCGAAUUGGAAUUGGAGCCAGUCAAUGGUAUUUUAAUAGAGGCUAAUGGCCAUUUUAAUUGCUGGGCAAGGCCGCAAAGUGGGCGGCCACACGUGGGUGGA
(((((((..(((.(((...(((((((((....((((.....))))...........(((.....))))))))))))))).)))..((((((.......)))))).....))))))). ( -44.50)
>consensus
CCACUUAAAGCCAAGCCCGAAUUGGAAUUGGAGCCAGUCAAUGGUAUUUUAAUAGAGGCUAAUGGGCAUUUUAAUUGCUGGGCAAGGCCGCAAAAUGGGUGGCCACACGUGGGUGGG
(((((((..(((.(((((..((((((((....((((.....)))))))))))).).))))....((((.......)))).)))..((((((.......)))))).....))))))). (-35.68 = -36.00 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:33 2006