Locus 3159

Sequence ID X_DroMel_CAF1
Location 8,401,829 – 8,401,947
Length 118
Max. P 0.828218
window5176

overview

Window 6

Location 8,401,829 – 8,401,947
Length 118
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.62
Mean single sequence MFE -39.62
Consensus MFE -26.69
Energy contribution -29.68
Covariance contribution 2.99
Combinations/Pair 1.25
Mean z-score -1.37
Structure conservation index 0.67
SVM decision value 0.71
SVM RNA-class probability 0.828218
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8401829 118 + 22224390
ACCUGCAGAUUAGAUUGGGCAGUCUGGAGCAGCUCCAAGCGCUC--GUCAGUCAUGGUGAAGAUCUCUUCGAUGUGACUGAGAAUCAUCUGCAGGUACUCCGCCGAACUGCCCGCUUGGU
((((((((((..((((((((.(..(((((...)))))..)))))--.((((((((..(((((....)))))..)))))))).)))))))))))))).....(((((.(.....).))))) ( -50.50)
>DroSec_CAF1 1034 118 + 1
ACCUGCAGAUUAGACUGGGCAGUCUGGAGCAGCUCCAAGCGCUC--GUCAGUCAUUGUGAAGAUCUCUUCGAUGUGACUGAGAAUCAUCUGCAAGUACUCCGCCGAACUGCCAGCUUGGU
((.(((((((((((((....))))))((((.((.....))))))--.((((((((..(((((....)))))..)))))))).....))))))).)).....(((((.(.....).))))) ( -42.30)
>DroSim_CAF1 4834 120 + 1
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGUGGAUUCAGUCAUUGUGAAGAUCUCUUCGAUGUGACUGAGAAUCAUCUGCACGUACUCCGCCGAACUGCCCGCUUGGU
........................................((((((.((((((((..(((((....)))))..))))))))((....)).........)))))).....(((.....))) ( -25.40)
>DroPer_CAF1 3165 118 + 1
ACUUGGAGAUUGGACUGGGCGGUUUUAAGUAACUCCACGCGACC--GUCGGGCAUGGUCACGAUCUCGUCGAUGUGGCUGAGAAUCAUUUUGAGGUAUCCAGCGGAGCUUCCAGCCUUCU
.....(((((((((((((((((((....((......))..))))--))).....))))).)))))))...((...(((((.(((....)))(((((.(((...))))))))))))).)). ( -34.50)
>DroEre_CAF1 4482 118 + 1
ACCUGCAGAUUGGACUGGGCAGUCUGGAGUAACUCCACACGCUC--GUCAGUCAUGGUGAAGAUCUCCUCGAUGUGACUGAGAAUCAUCUGCAGAUACUCCGCUGAACUGCCCGCUUGGC
..((((((((.((...((((.((.(((((...))))).))))))--.((((((((..(((.(....).)))..))))))))...))))))))))...............(((.....))) ( -39.00)
>DroYak_CAF1 4120 118 + 1
ACCUGCAGAUUGGACUGGGCAGUCUGGAGUAGCUCCACGCGCUC--GUCGGUCAUGGUGAAGAUCUCCUCGAUGUGACUGAGAAUCAUCUGCAGGUACUCCGCCGAACUGCCUGCUUGGC
((((((((((.((...((((.((.(((((...))))).))))))--.((((((((..(((.(....).)))..))))))))...)))))))))))).....(((((.(.....).))))) ( -46.00)
>consensus
ACCUGCAGAUUGGACUGGGCAGUCUGGAGUAGCUCCACGCGCUC__GUCAGUCAUGGUGAAGAUCUCUUCGAUGUGACUGAGAAUCAUCUGCAGGUACUCCGCCGAACUGCCCGCUUGGU
((((((((((......((((.((.(((((...))))).))))))...((((((((..(((((....)))))..)))))))).....)))))))))).....(((((.(.....).))))) (-26.69 = -29.68 +   2.99)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:30 2006