| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,395,044 – 8,395,139 |
| Length | 95 |
| Max. P | 0.843210 |
| Location | 8,395,044 – 8,395,139 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 82.60 |
| Mean single sequence MFE | -21.15 |
| Consensus MFE | -12.88 |
| Energy contribution | -13.38 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.843210 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8395044 95 + 22224390 UCAUCAAUGAGAAUAUUCGUUCAUUUGCUGCUGUCCACCAGUGGACUA------------------UCGAAAAUAUCGAUGGAAAUCGAUCAUCAAAUCAUUUCGAGCCACUU .....((((((........))))))....((.(((((....)))))..------------------((((((((((((((....)))))).)).......))))))))..... ( -19.11) >DroSec_CAF1 2002 110 + 1 UCAUGAAAGAGAAUAUUCAUUCAUUUGC---UGUCCACCAGUGGACCAAUAUCGAUUUUCCACCAGUGGAAAAUAUCGAUGGAAAUUGAUCAUCAAAUCAUUUCGAGCAACUU ..(((((.(((....))).)))))((((---((((((....)))))...(((((((((((((....))))))..)))))))(((((.(((......)))))))).)))))... ( -29.80) >DroEre_CAF1 2009 92 + 1 UCAUCAAAGAGAAUAUUCAUUCAUUUGC---UGUUCACCAGUGGACUA------------------UCGAAAAUAUCGGUCGAAAUCGAUCAUCAAAUCAUUUCAAGCAACUU ..........((((....))))..((((---((((((....)))))..------------------...........(((((....)))))..............)))))... ( -16.00) >DroYak_CAF1 2036 92 + 1 UCAUCAAAGAGAAUACUCAUUCAUUUGC---UGUCCACCAGUGGACUA------------------UCGAAAAUAUCGACGGAAAUCGAUCAUCAAAUCAUUUUCAGCAACUU ........(((....)))......((((---((((((....)))))..------------------((((.....)))).((((((.(((......))))))))))))))... ( -19.70) >consensus UCAUCAAAGAGAAUAUUCAUUCAUUUGC___UGUCCACCAGUGGACUA__________________UCGAAAAUAUCGAUGGAAAUCGAUCAUCAAAUCAUUUCGAGCAACUU ..........((((....))))..((((....(((((....)))))......................((....((((((....))))))..))............))))... (-12.88 = -13.38 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:28 2006