Locus 3156

Sequence ID X_DroMel_CAF1
Location 8,388,444 – 8,388,539
Length 95
Max. P 0.529096
window5173

overview

Window 3

Location 8,388,444 – 8,388,539
Length 95
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 72.05
Mean single sequence MFE -23.90
Consensus MFE -18.65
Energy contribution -18.68
Covariance contribution 0.03
Combinations/Pair 1.10
Mean z-score -0.23
Structure conservation index 0.78
SVM decision value -0.01
SVM RNA-class probability 0.529096
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8388444 95 + 22224390
----------AGGUAUAGCCAGCCAAAGUUUUGAUGGUGUCGAGCGAUGGCGACAGACGUUGUGCUUUACCGAUUGACUGCCCCUUUUCUUUCUUUUUGCCA---CCA
----------.((((.((((.((((..((((.(((...)))))))..))))(((....)))).))).))))...............................---... ( -18.50)
>DroSec_CAF1 17131 98 + 1
----------AGGUAUAGCCAGCCAAAGUUUCGAUGGUGUCGAGCGAUGGCGACAGGCGUCGUGCUUUACCGCUUGACUGCCCUUUUCUUUUUCCAUUUCCAUUUCCA
----------.((((..(((.((((..(((.((((...)))))))..))))....)))((((.((......)).)))))))).......................... ( -25.10)
>DroSim_CAF1 13458 82 + 1
--------------------------AGUUUCGAUGGUGUCGAGCGAUGGCGACAGACGUCGUGCUUUACCGCUUGACUGCCCUUUUCCUUUUCCAUUUCCAUUUCCA
--------------------------.........(((((((((((.(((((((....)))))....)).)))))))).))).......................... ( -20.10)
>DroEre_CAF1 18338 82 + 1
--------AACGGUAUA----GCCAAAGUUUUGAUGGUGUCGAGCGAUGGCGACAGACGUCGUGCUUUACCGCUUGACUGCCCUUCUUCCA--CCA------------
--------...((((..----((((.........))))((((((((.(((((((....)))))....)).)))))))))))).........--...------------ ( -22.90)
>DroYak_CAF1 17487 102 + 1
UAAAGGUAAGCGGUAUA----GCCCAAGUUUCGAUGGUGUCGAGCGAUGGCGACAGACGUCGUGCUUUACCGCUUGGCUGCCCACUUUCCA--CCAUUCUGGUAUCCU
...((.(((((((((.(----((.......(((((...)))))((((((........))))))))).))))))))).))...........(--((.....)))..... ( -32.90)
>consensus
__________AGGUAUA____GCCAAAGUUUCGAUGGUGUCGAGCGAUGGCGACAGACGUCGUGCUUUACCGCUUGACUGCCCUUUUUCUUU_CCAUUUCCAU_UCCA
...........(((.......)))...........(((((((((((.(((((((....)))))....)).)))))))).))).......................... (-18.65 = -18.68 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:27 2006