Locus 3153

Sequence ID X_DroMel_CAF1
Location 8,377,165 – 8,377,271
Length 106
Max. P 0.961516
window5169

overview

Window 9

Location 8,377,165 – 8,377,271
Length 106
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 69.75
Mean single sequence MFE -33.11
Consensus MFE -18.67
Energy contribution -19.33
Covariance contribution 0.67
Combinations/Pair 1.26
Mean z-score -1.88
Structure conservation index 0.56
SVM decision value 1.53
SVM RNA-class probability 0.961516
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8377165 106 + 22224390
AGAGCCAAACGACCAAAAUGUGGCGGCAGUCAACGAUACUGGCCGCGUUACUAGUGGCU---CUUUUGUGUGCGGGCAGUGCAGAAAGCAA-AGGUAAGCGAUCAAAAUC
.((((((.........((((((((..((((.......)))))))))))).....)))))---)(((((..(((..((..(((.....))).-..))..)))..))))).. ( -32.74)
>DroPse_CAF1 6500 100 + 1
GGAGCGGC---UCGAAAAUGCGGCGGCAGUCAACGAUGCUGGCCGCGAUAUUGCUAGCUGCCUUUUU------GGGCAGUGCAA-CUGCAAGAAGUAAGUCCACAGCAAC
((((((((---(((......)))(((((........))))))))))....(((((.(((((((....------)))))))((..-..))....))))).)))........ ( -35.70)
>DroGri_CAF1 5548 90 + 1
A-----CAGCAACUCAAAUGAGGCGGCAGUCAAUGAUGCUGGCCGCGAUAUUACUGGCUGCCAUUUU------GGGCAGCGCAA-CGGCAACGAGUAAGUAU--------
.-----......(((....)))((((((((.......))).)))))....(((((.((((((.....------.))))))....-((....)))))))....-------- ( -32.10)
>DroWil_CAF1 5481 92 + 1
-----------AACAAAAUGCGGCGGCAGUCAACAAUGCUGGCCGCGAUAUUAAUUGCUGCCAUUUU------UGGCAGUGCAA-CGGCAAUGAGUAAGUUAAUUAACUU
-----------.......((((((((((........)))).))))))..((((((((((((((....------)))))))((..-..))........)))))))...... ( -29.40)
>DroYak_CAF1 5931 106 + 1
AGAGCCAAACGACCAAAAUGUGGCGGCAGUCAACGAUACUGGCCGCGUUAUUAGUGGCU---CUUUUGUGUGCGGGCAGUGCAGAAAGCAA-AGGUAAGCCAUCAAAAUC
.((((((.........((((((((..((((.......)))))))))))).....)))))---)(((((((.((..((..(((.....))).-..))..)))).))))).. ( -33.04)
>DroPer_CAF1 8967 100 + 1
GGAGCGGC---UCGAAAAUGCGGCGGCAGUCAACGAUGCUGGCCGCGAUAUUGCUAGCUGCCUUUUU------GGGCAGUGCAA-CUGCAAGAAGUAAGUCCACAGCAAC
((((((((---(((......)))(((((........))))))))))....(((((.(((((((....------)))))))((..-..))....))))).)))........ ( -35.70)
>consensus
AGAGC_AA___ACCAAAAUGCGGCGGCAGUCAACGAUGCUGGCCGCGAUAUUACUGGCUGCCAUUUU______GGGCAGUGCAA_CAGCAA_AAGUAAGUCAACAAAAUC
..................((((((((((........)))).)))))).((((....(((((((..........)))))))((.....))....))))............. (-18.67 = -19.33 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:24 2006