| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,360,674 – 8,360,766 |
| Length | 92 |
| Max. P | 0.623397 |
| Location | 8,360,674 – 8,360,766 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 73.87 |
| Mean single sequence MFE | -22.72 |
| Consensus MFE | -12.86 |
| Energy contribution | -13.70 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.623397 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8360674 92 - 22224390 AAGAUGAACAGAACAUUGCCGGGUAUGGACAUGGCAAUAAGUAUCCUCGCUGUCUUCGCAUAGGGAACUGUAUGAAGAGC-----ACA--AAUGAAUAA------- ..............(((((((.((....)).)))))))..........((..((((((.((((....)))).))))))))-----...--.........------- ( -21.20) >DroVir_CAF1 5455 94 - 1 AAGAUGAACAAUAUAUUGCCGGGUAUGGACAUGGCGAUGAGAAUGCGUGCCGUCUUAGCAUAGGGCACUGCGCGUA----------AA--AUUGAAUAAGUUUAAU ....(((((....((((((((.((....)).))))))))....(((((((.((((((...))))))...)))))))----------..--.........))))).. ( -25.80) >DroPse_CAF1 22881 92 - 1 AAGAUAAACAGUAUGUUGCCCGGUAUGGACAUGGCAAUGAGUAUCCUUGCCGUCUUUGCGUAGGGAACUGCAAGCAGAUA-----ACA--AAUUAUUAU------- ..(((((...((...((((...(((.((((..(((((.(.....).))))))))).)))((((....))))..))))...-----)).--..)))))..------- ( -23.20) >DroWil_CAF1 2957 100 - 1 AAAAUGAAUAGCACAUUGCCAGGUAUGGACAUGGCAAUGAGUAUCCUUGCCGUUUUAGCAUAGGGCACUAAAAGAAAUGAACAGCAUAUCAGUUAAUAU------A ........((((.((((((((.((....)).))))))))(((..((((((.......))).)))..)))....((.(((.....))).)).))))....------. ( -24.70) >DroAna_CAF1 11700 88 - 1 AAUAUGAACAGUAUAUUGCCGGGAAUGGACAUGGCAAUGAGUAUCCUCGCCGUUUUCGCAUAGGGAACUGAAA-AACAGG-----AUA--ACAGAG---------- .............(((((((((.......).))))))))..((((((..(.(((..(.....)..))).)...-...)))-----)))--......---------- ( -18.20) >DroPer_CAF1 23027 92 - 1 AAGAUAAACAGUAUGUUGCCCGGUAUGGACAUGGCAAUGAGUAUCCUUGCCGUCUUUGCGUAGGGAACUGCAAGCAGAUA-----ACA--AAUUAUUAU------- ..(((((...((...((((...(((.((((..(((((.(.....).))))))))).)))((((....))))..))))...-----)).--..)))))..------- ( -23.20) >consensus AAGAUGAACAGUAUAUUGCCGGGUAUGGACAUGGCAAUGAGUAUCCUUGCCGUCUUAGCAUAGGGAACUGCAAGAAGAGA_____ACA__AAUGAAUAU_______ .............((((((((.((....)).))))))))(((.(((((((.......))).)))).)))..................................... (-12.86 = -13.70 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:53 2006