Locus 3140

Sequence ID X_DroMel_CAF1
Location 8,359,429 – 8,359,521
Length 92
Max. P 0.799702
window5133

overview

Window 3

Location 8,359,429 – 8,359,521
Length 92
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 77.58
Mean single sequence MFE -21.13
Consensus MFE -17.38
Energy contribution -17.63
Covariance contribution 0.25
Combinations/Pair 1.11
Mean z-score -1.13
Structure conservation index 0.82
SVM decision value 0.61
SVM RNA-class probability 0.799702
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8359429 92 + 22224390
CCUCGGCCAUGUUCACGGCCACCUCGUCGUGCUUUGUGCUGGGUAGGAUUGCACCUGCGACUU-UUCCAUUCCA-UACACUCUCAAU--UAUAUUA
.((((((((....((((((......))))))...)).))))))..(((((((....))))...-.)))......-............--....... ( -21.80)
>DroVir_CAF1 3915 88 + 1
CAUCGGCCAUGUUUACGGCGACCUCGUCGUGUUUUGUCCUGGGUAAGCUUAA-CAUGCUGAGU---CCAUAUCG-UUGCC---UUGUUUAACAUAU
....(((.(((..(((((((....)))))))........((((..(((....-...)))...)---)))...))-).)))---............. ( -20.90)
>DroSec_CAF1 24615 91 + 1
CCUCGGCCAUGUUCACGGCCACGUCGUCGUGCUUUGUGCUGGGUAGGAUUGCACCUGCUACUUUUUCCAUGCCA-UUCCCUCUAUAU---AUAUC-
...((((((....((((((......))))))...)).))))(((((((..((....)).......))).)))).-............---.....- ( -21.30)
>DroSim_CAF1 27821 92 + 1
CCUCGGCCAUGUUCACGGCCACCUCGUCGUGCUUUGUGCUGGGUAGGAUUGCACCUGCUACUU-UUCCAUUCCA-CUCCCUCUAUAU--UAUAUCA
...((((((....((((((......))))))...)).))))((((((......))))))....-..........-............--....... ( -20.70)
>DroEre_CAF1 21801 91 + 1
CCUCGGCCAUGUUCACGGCCACCUCGUCGUGCUUUGUGCUGGGUAGGAUUGCACCUGCUACAU-UUCCAUUCCACUAUA-UAUUUAC---UUAUUA
...((((((....((((((......))))))...)).))))((((((......))))))....-...............-.......---...... ( -20.70)
>DroYak_CAF1 23458 85 + 1
CCUCGGCCAUGUUCACGGCCACCUCGUCGUGCUUUGUGCUGGGUAGGAUUGCACUUGCUACCA-UGGCA------UAUU-UAUUUAC---UUAUUA
.....((((((...(((((......)))))((...((((...........))))..))...))-)))).------....-.......---...... ( -21.40)
>consensus
CCUCGGCCAUGUUCACGGCCACCUCGUCGUGCUUUGUGCUGGGUAGGAUUGCACCUGCUACUU_UUCCAUUCCA_UACCCUCUUUAU___AUAUUA
...((((((....((((((......))))))...)).))))((((((......))))))..................................... (-17.38 = -17.63 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:53 2006