Locus 3139

Sequence ID X_DroMel_CAF1
Location 8,358,554 – 8,358,645
Length 91
Max. P 0.616918
window5132

overview

Window 2

Location 8,358,554 – 8,358,645
Length 91
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 72.49
Mean single sequence MFE -20.17
Consensus MFE -5.77
Energy contribution -5.57
Covariance contribution -0.20
Combinations/Pair 1.38
Mean z-score -1.71
Structure conservation index 0.29
SVM decision value 0.17
SVM RNA-class probability 0.616918
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8358554 91 + 22224390
ACUU-------UAUGGCUUUGCCUCAUCAAU---AAUCCUGUGCGAUGAAGCCACGUGAUAAAAUUAGAAAU--------------CAGCUAUAAGUAC-----GCAUUACACUUAAACA
..((-------((((((...((.(((((.((---(....)))..))))).))....((((..........))--------------))))))))))...-----................ ( -14.50)
>DroSec_CAF1 23765 90 + 1
ACUU-------UAUGGCU-UGCUUCAUCAAU---AAUCCUGUGCGAUGAAGCCGCGUGAUAAAAUUAGAAAU--------------CAGCCAUAAGUAC-----GCAAAAUACUUAAACA
..((-------((((((.-.((((((((.((---(....)))..))))))))....((((..........))--------------))))))))))...-----................ ( -20.90)
>DroSim_CAF1 26960 98 + 1
ACUUUAUACUUUAUGGCUUUGCUUCAUCAAU---AAUCCUGUGCGAUGAAGCCGCGUGAUAAAAUUAGAAAU--------------CAGCCAUAAGUAC-----GCAUAAUACUUAAACA
......(((((.(((((...((((((((.((---(....)))..))))))))....((((..........))--------------)))))))))))).-----................ ( -22.20)
>DroEre_CAF1 20900 107 + 1
UCGU-------UAUGGCUUUGCUUCAUAAAA---AAUCCUGUGCGGCGA---CACGUGAUAAUAUUCGAAAUCAGCUCUAAGCUCUGAGUAAUCAGUACUCCAAGCAUAAUGCUAUAAUA
..((-------((((((.(((((.((((...---.....)))).)))))---......................(((...((..((((....))))..))...))).....)))))))). ( -24.50)
>DroYak_CAF1 22535 105 + 1
UCUU-------UAUGGCUUUGCUUCAUAAAUAAUAAUCCUGUGCGAUGG---CACAUGAUAGAAUUCGAAAUUAUAAAUUAGAAAUCAGCUACAAGUAC-----GCAUAAUACUUUAGCA
..((-------(((((.......))))))).....(((.(((((....)---)))).))).((.(((..............))).)).((((.(((((.-----......))))))))). ( -18.74)
>consensus
ACUU_______UAUGGCUUUGCUUCAUCAAU___AAUCCUGUGCGAUGAAGCCACGUGAUAAAAUUAGAAAU______________CAGCCAUAAGUAC_____GCAUAAUACUUAAACA
...........(((((((.(((....................)))(((......)))..............................))))))).......................... ( -5.77 =  -5.57 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:52 2006