Locus 3136

Sequence ID X_DroMel_CAF1
Location 8,354,670 – 8,354,768
Length 98
Max. P 0.512497
window5127

overview

Window 7

Location 8,354,670 – 8,354,768
Length 98
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 80.70
Mean single sequence MFE -17.67
Consensus MFE -14.73
Energy contribution -14.48
Covariance contribution -0.25
Combinations/Pair 1.17
Mean z-score -1.08
Structure conservation index 0.83
SVM decision value -0.04
SVM RNA-class probability 0.512497
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8354670 98 + 22224390
GUUGUUAUUGUUGCCUUGCAGCCAUAUCAACGGUCCGGUGACUAAGCUCAACCUCUCAACCUC------GACCUCAGCCUCAGUCCUUCUACCUA-----CUACCUACU---------
((((.(((.(((((...))))).))).))))(((..((.((((..(((.....((........------))....)))...))))))...)))..-----.........--------- ( -18.10)
>DroSec_CAF1 20112 92 + 1
GUUGUUAUUGUUGCCUUGCAGCCAUAUCAACGGUCCGGUGACUAAGCUCAACCUCUCAACCUC------GACCUCAGCCUCAGUCCUUUUACCUA-----CUA---------------
((((.(((.(((((...))))).))).))))(((..((.((((..(((.....((........------))....)))...))))))...)))..-----...--------------- ( -18.10)
>DroSim_CAF1 23238 98 + 1
GUUGUUAUUGUUGCCUUGCAGCCAUAUCAACGGUCCGGUGACUAAGCUCAACCUCUCAACCUC------GACCUCAGCCUCAGUCCUUCUACCUA-----CUACCUACU---------
((((.(((.(((((...))))).))).))))(((..((.((((..(((.....((........------))....)))...))))))...)))..-----.........--------- ( -18.10)
>DroEre_CAF1 17167 100 + 1
GUUGUUAUUGUUGCCUUGCAGCCAUAUCAACGGUCCGGUGACUAAGCUCAACCUCUCAACCUCGACCUCGACCUCAGCCUCAGUCCUUCUACCUA-----CUACC-------------
((((.(((.(((((...))))).))).))))(((..((.((((..(((.............(((....)))....)))...))))))...)))..-----.....------------- ( -18.03)
>DroYak_CAF1 18386 113 + 1
GUUGUUAUUGUUGCCUUGCAGCCAUAUCAACGGUCCGGUGACUAAGCUCAACCUCUCAACCUCGACCUCGACCUCAGCCUCAGUCCUUUUACCUA-----CUACCUACUACCCACAAC
((((.(((.(((((...))))).))).))))(((..((.((((..(((.............(((....)))....)))...))))))...)))..-----.................. ( -18.03)
>DroAna_CAF1 6217 99 + 1
GUUGUUGUUGUUGCUUUACAGCCAUAUCAACGGUCCGGUGACUAAGCCCAGCCUAU------------------CAGCCUCAGCCCUUCUACCUCUGUAACCCCCAAAAAACCAGAA-
((((.(((.((((.....)))).))).))))(((..(((......)))..)))...------------------...................((((...............)))).- ( -15.66)
>consensus
GUUGUUAUUGUUGCCUUGCAGCCAUAUCAACGGUCCGGUGACUAAGCUCAACCUCUCAACCUC______GACCUCAGCCUCAGUCCUUCUACCUA_____CUACCUACU_________
((((.(((.(((((...))))).))).))))(((..(((......)))..)))................................................................. (-14.73 = -14.48 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:47 2006