Locus 3134

Sequence ID X_DroMel_CAF1
Location 8,350,718 – 8,350,831
Length 113
Max. P 0.624270
window5124

overview

Window 4

Location 8,350,718 – 8,350,831
Length 113
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 70.82
Mean single sequence MFE -26.38
Consensus MFE -6.30
Energy contribution -7.48
Covariance contribution 1.18
Combinations/Pair 1.31
Mean z-score -2.22
Structure conservation index 0.24
SVM decision value 0.19
SVM RNA-class probability 0.624270
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8350718 113 + 22224390
U-GGCAAACCCAUAUGCCUGCAUAAAUAUGAAAACUCAGGGUAGCAGAG-CCCAUUUAAAAUGCAUUUCCUAGUA-----CGAAAGUACUUUUGCACAGGAGGGCAAAAAUCGCUUUUAA
.-(((..((((.((((....))))....(((....)))))))......(-(((.(((....((((......((((-----(....)))))..))))..))))))).......)))..... ( -29.50)
>DroSec_CAF1 16101 112 + 1
U-GGCAAACCCAUAUGCCUGCAUGCAUAUGU-AACUCAGGGUAGCAGAG-CCCAUUUAAAAUGCAUUUCCUAGUA-----CGAAAGUACUUUUGCACAGGAGGGCAAAAAUCGCUUUUAA
.-(((.....(((((((......))))))).-......((((......)-)))........(((.((((((((((-----(....))))).......)))))))))......)))..... ( -30.91)
>DroSim_CAF1 19117 112 + 1
U-GGCAAACCCAUAUGCCUACAUGCAUAUGU-AACUCAGGGUAGCAGAG-UCCAUUUAAAAUGCAUUUCCUAGUA-----CGAAAGUACUUUUGCACAGGAGGGCAAAAAUCGCUUUUAA
(-((((((..(((((((......))))))).-.....((((..(((...-...........)))...))))((((-----(....)))))))))).)).((((((.......)))))).. ( -27.94)
>DroEre_CAF1 13281 102 + 1
UCUAAAAAUCUAUAUGCCCU---------UU-UACUCAGGGUAGCAGUG-UCCAUUUAAAAUGCAUUUCCUAGUC-----CGAAAGUACU-UUGCACAGGAGGGCAAA-AUCGCUUUUAA
..............((((((---------((-(...((((((((((.((-......))...)))...........-----(....)))))-)))...)))))))))..-........... ( -21.90)
>DroYak_CAF1 14002 102 + 1
CCAUCAAAUCUAUAUGCCCA---------AU-AACUUAGGGUAGCAGAG-CCCAUUUAAAAUACAUUUCCUAGUG-----CAAAAGUACU-UUGCACAGGAGGGCAGC-AGAGCUUUUAA
........(((...(((((.---------..-......((((......)-)))..............((((.(((-----((((.....)-)))))))))))))))..-)))........ ( -31.10)
>DroPer_CAF1 12527 110 + 1
C-ACCAAGGUCAAGGUCCAGAAACAAUGCAAAAAUGCAAAAUA--AAAGUCCUAUUAAAAAUGCAUCGA-GAAUAAGAUAGG-AAGGGCGUUUA-----AAGAGCACAAAACGCUUCUAA
.-.........((.((((........((((....)))).....--....(((((((.............-......))))))-).)))).))..-----..((((.......)))).... ( -16.91)
>consensus
U_GGCAAACCCAUAUGCCUGCAU__AUAUGU_AACUCAGGGUAGCAGAG_CCCAUUUAAAAUGCAUUUCCUAGUA_____CGAAAGUACUUUUGCACAGGAGGGCAAAAAUCGCUUUUAA
..............(((((...................(((.........)))..............((((.(((.....(....)......)))..))))))))).............. ( -6.30 =  -7.48 +   1.18)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:45 2006