Locus 3125

Sequence ID	X_DroMel_CAF1
Location	8,334,944 – 8,335,055
Length	111
Max. P	0.659081

overview

Window 7

Location	8,334,944 – 8,335,055
Length	111
Sequences	4
Columns	115
Reading direction	forward
Mean pairwise identity	83.11
Mean single sequence MFE	-26.60
Consensus MFE	-17.29
Energy contribution	-19.60
Covariance contribution	2.31
Combinations/Pair	1.09
Mean z-score	-1.81
Structure conservation index	0.65
SVM decision value	0.26
SVM RNA-class probability	0.659081
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8334944 111 + 22224390
UAUGAUAUACUUGAAAUAUAUUGCUG----AGCGGUUAAAAAACUCCUGUUAUCGCCGUCUAUCGAUGACACCGAUAGCGGCAUCAUCUGUUCCGUGUCAUCCCCAAAAGUUUCU
...((...((((.........(((.(----(((((......(((....)))...((((.((((((.......)))))))))).....)))))).)))..........)))).)). ( -25.31)
>DroSec_CAF1 7053 106 + 1
UACUAAACAUUUGAAAUAUAUUGCCGAAUUAGCGGUUAGAAAACUCCUGUUAUCGCCGUCUAUCG---------AUAGCGGCAUCAUCUGUUCCGUGUCAUCCCCAAAAGUUUCG
............(((((...(((..((....((((.((((......(((((((((........))---------))))))).....))))..))))....))..)))..))))). ( -21.70)
>DroEre_CAF1 7565 112 + 1
UAG---GCAUUUAAAAAGUAUUGCUGAAUUAGCGGCCAGAAAACUCCUGUUAUCGCCGUUAAUCGAUGACACCGAUAGCAGCAUCAUCUGUUCCGUGUCAUCCCCAAAAGUUUCA
..(---(((............))))((.((((((((..((.(((....))).))))))))))))((((((((.((..((((......)))))).))))))))............. ( -31.30)
>DroYak_CAF1 7483 112 + 1
CAC---ACAUUUGAAAUGUAUUGCUGAAUUAGCGGCCAGAAAACUCCUGUUAUCGCCGCCAAUCGAUGACACCGAUAGCAUCAUCAUCUGUUCCGUGUCAUCCCCAAAAGUUUCA
...---.....((((((...(((..((.((.(((((..((.(((....))).))))))).))))((((((((.((..(((........))))).))))))))..)))..)))))) ( -28.10)
>consensus
UAC___ACAUUUGAAAUAUAUUGCUGAAUUAGCGGCCAGAAAACUCCUGUUAUCGCCGUCAAUCGAUGACACCGAUAGCAGCAUCAUCUGUUCCGUGUCAUCCCCAAAAGUUUCA
............(((((...(((........(((((..((.(((....))).))))))).....((((((((.((..((((......)))))).))))))))..)))..))))). (-17.29 = -19.60 +   2.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:30 2006