Locus 3124

Sequence ID X_DroMel_CAF1
Location 8,331,029 – 8,331,121
Length 92
Max. P 0.574807
window5106

overview

Window 6

Location 8,331,029 – 8,331,121
Length 92
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 81.58
Mean single sequence MFE -28.55
Consensus MFE -19.40
Energy contribution -19.57
Covariance contribution 0.17
Combinations/Pair 1.36
Mean z-score -1.47
Structure conservation index 0.68
SVM decision value 0.08
SVM RNA-class probability 0.574807
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8331029 92 + 22224390
GUAGAAUAUCGGUGGCGGUGGCGGCGGUUGGAGCAACCUCGGCGGUGUUAUCAGGUGAUGAUGCGGCGAUGGAG---UAGUAUAGAAACUAAACU
..........(((((((.((.(((.(((((...)))))))).)).))))))).(((....((((.((......)---).))))....)))..... ( -25.30)
>DroSec_CAF1 3181 92 + 1
GAAGAAUAUCGGCUGCGGUGGCGGCGGUUGGAGCAGCCUCGGCGGCGUUAUCAGAUGAUGAUGCGGCGAUGGAG---UAGUGUAGAAACUAAACU
......((((((((((..((((....))))..))))))...((.((((((((....)))))))).))))))...---((((......)))).... ( -33.50)
>DroSim_CAF1 2032 92 + 1
GAAGAAUAUCGGCUGCGGUGGCGGCGGUUGGAGCAGCCUCGGCGGCGUGAUCAGAUGAUGAUGCGGCGAUGGAG---UAGUGUAGAAACUAAACU
......((((((((((..((((....))))..))))))...((.((((.(((....))).)))).))))))...---((((......)))).... ( -31.60)
>DroEre_CAF1 3599 92 + 1
GAAAAAUAUCGGUGGCGGUGGCGGCGGUUGGAGCAGCCUAGGCGGCGACAUCAUGUGAUGAUGCGGCGAUGGAG---AAGUGUAGAAGCUAAACU
......((((.((.((....)).))(((((...)))))...((.(((.((((....)))).))).))))))...---.(((......)))..... ( -23.50)
>DroYak_CAF1 3579 92 + 1
GAAGAAUAUCGGGGGCGGUGGCGGAGGUUGGAGAAGCCUCGGUGGCGACAUCAUGUGAUGGUGCGGCGAUGGAG---AAGUGUAGAAACUGAACU
...........((..((((..(.((((((.....)))))).((.(((.((((....)))).))).)).......---.......)..))))..)) ( -26.30)
>DroAna_CAF1 4559 86 + 1
AUAGAAUAUGG---------GCGGCGGCUGGAGCAGCCUGGGCGGCGACAUCAGGUGAUGUGGCGGUGGUGGCGGCGGCGUCAGGAAGUUGAACU
.........(.---------.((((..(((..((.(((...((.((.(((((....))))).)).))...)))....))..)))...))))..). ( -31.10)
>consensus
GAAGAAUAUCGGCGGCGGUGGCGGCGGUUGGAGCAGCCUCGGCGGCGACAUCAGGUGAUGAUGCGGCGAUGGAG___UAGUGUAGAAACUAAACU
......((((...........(((.(((((...))))))))((.((((((((....)))))))).))))))........................ (-19.40 = -19.57 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:29 2006