Locus 312

Sequence ID X_DroMel_CAF1
Location 991,390 – 991,487
Length 97
Max. P 0.541482
window474

overview

Window 4

Location 991,390 – 991,487
Length 97
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 89.55
Mean single sequence MFE -22.35
Consensus MFE -18.40
Energy contribution -19.28
Covariance contribution 0.88
Combinations/Pair 1.09
Mean z-score -1.40
Structure conservation index 0.82
SVM decision value 0.02
SVM RNA-class probability 0.541482
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 991390 97 + 22224390
AUUGAUCGUCGAGAUAAAAAAUGAUUAUAAACAUUCACCAACACACGAGCGCGCUCGAAAGAGAGAGCGAUAAUAAGCACGUGAAAACGGAGCCU-------CC
..(((((((...........)))))))...................((((((.(((....)))...))).......((.(((....)))..))))-------). ( -20.40)
>DroSec_CAF1 73950 97 + 1
AUCGAUCGUUGAGAUAAAAAAUUAUUAUAAACAUUCACCAACACACGCGCGCGCUCGAAAGAGAGAGCGAUAGUAAGCACGUGAAAACGGUGCCU-------CC
...((..(((..(((((....)))))...)))..))........((.(((.(.(((....))).).)))...))..((((((....)).))))..-------.. ( -22.00)
>DroSim_CAF1 53266 97 + 1
AUCGAUCGUUGAGAUAAAAAAUGAUUAUAAACAUUCACCAACACACGCGCGCGCUCGAAGGAGAGAGCGAUAGUAAGCACGUGAAAACGGUGCCU-------CC
...(((((((.........))))))).........((((....((((.((.(((((........))))).......)).)))).....))))...-------.. ( -23.50)
>DroYak_CAF1 79812 104 + 1
AUCGAUCGUUAAGAUAAAAAACAAUCAUAAACAUUCACCAACACACGCGCGCGCUCGAAAGAGAGAGCGAUAGUGAGCACGUGAAAACGGAGCCUAUUGCCUAU
.....(((((..(((........))).......(((((...(.(((.(((.(.(((....))).).)))...))).)...)))))))))).............. ( -23.50)
>consensus
AUCGAUCGUUGAGAUAAAAAAUGAUUAUAAACAUUCACCAACACACGCGCGCGCUCGAAAGAGAGAGCGAUAGUAAGCACGUGAAAACGGAGCCU_______CC
...(((((((.........))))))).........((((....((((.((.(((((........))))).......)).)))).....))))............ (-18.40 = -19.28 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:27 2006