| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,325,448 – 8,325,543 |
| Length | 95 |
| Max. P | 0.655415 |
| Location | 8,325,448 – 8,325,543 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 77.76 |
| Mean single sequence MFE | -40.75 |
| Consensus MFE | -28.99 |
| Energy contribution | -29.80 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.655415 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8325448 95 - 22224390 ----G------AGCA-CCUUAGUAGUUGGGCUGGCCAUAGGGCGCGGGGCUGUUGUACAGUGGAGCCUCGUUGCCGUAGGCAUUGCCAUCGGCAGAGGAGGCGGCA ----.------.((.-((((.((.....(((..(((.((.(((((((((((.(........).))))))).)))).)))))...)))....)).))))..)).... ( -41.60) >DroVir_CAF1 17930 97 - 1 ----GCA----UCU-GGCUUAGUAGCUGGGGGAGCCAUAGGGAGCUGGGCUGGCGUAGAGGGGGGUUUCAGCGCCGGCGGCAUAGCUAUCGGAACUGGGACCGGAG ----...----(((-((((((((..(((..((.(((.(((....))).((((((((.((((....)))).)))))))))))....))..))).)))))).))))). ( -40.60) >DroSec_CAF1 18707 95 - 1 ----G------ACCA-ACUUAGUAGCUGGGCUGGCCAUAGGGCGCGGGGCUGUUGUACAGUGGAGCCUCGUUGCCGUAGGCAUUGCCAUCGGCAGAGGAGGCGGCA ----(------.((.-.(((..(.(((((((..(((.((.(((((((((((.(........).))))))).)))).)))))...)))..)))).)..)))..))). ( -41.10) >DroSim_CAF1 18856 95 - 1 ----G------ACCA-ACUUAGUAGCUGGGCUGGCCAUAGGGCGCGGGGCUGUUGUACAGUGGAGCCUCGUUGCCGUAGGCAUUGCCAUCGGCAGAGGAGGCGGCG ----(------.((.-.(((..(.(((((((..(((.((.(((((((((((.(........).))))))).)))).)))))...)))..)))).)..)))..))). ( -41.10) >DroEre_CAF1 17291 99 - 1 ----G-ACCUGACCA--CCUAGUAGUUGGGCUGGCCGUAGGGCGCGGGGCUGUUGUACAGUGGGGCCUCGUUGCCGUAGGCAUUGCCAUCGGCGGAGGAGGCGCUA ----.-.((((..((--(((((...))))).))(((....))).))))((((.....))))((.(((((.((((((..(((...)))..))))))..))))).)). ( -40.50) >DroAna_CAF1 18247 99 - 1 CCACA------ACCC-ACUUAGUAGUUGGGCUGACCGUAAGGGGCGGGACUGGCGUACAGAGGAGCCUCGUUGCCGGCGGAGUAGCCAUCGGCGGAGGAGGCGGCU .....------..((-.(((.(((((..(.(((.((....))..)))..)..)).))).)))..(((((.((((((..((.....))..))))))..))))))).. ( -39.60) >consensus ____G______ACCA_ACUUAGUAGCUGGGCUGGCCAUAGGGCGCGGGGCUGUUGUACAGUGGAGCCUCGUUGCCGUAGGCAUUGCCAUCGGCAGAGGAGGCGGCA ............(((....((((((((..((..(((....)))))..)))))))).....))).(((((.((((((..(((...)))..))))))..))))).... (-28.99 = -29.80 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:23 2006