Locus 3118

Sequence ID X_DroMel_CAF1
Location 8,316,285 – 8,316,377
Length 92
Max. P 0.966392
window5098

overview

Window 8

Location 8,316,285 – 8,316,377
Length 92
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 64.05
Mean single sequence MFE -20.48
Consensus MFE -11.71
Energy contribution -12.03
Covariance contribution 0.31
Combinations/Pair 1.12
Mean z-score -1.65
Structure conservation index 0.57
SVM decision value 1.59
SVM RNA-class probability 0.966392
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8316285 92 - 22224390
AAAAAUCUUUCUAGGAAGCACUCUUAAGCUUUUGUAAUCACUGCACACUAAGCAGUGUUGAUCAGUUCGUUCGAAAGCUUAUCCU-UG--------------------------UUUUU
.............(((((((....((((((((((.(((((((((.......))))))..((.....)))))))))))))))....-))--------------------------))))) ( -23.00)
>DroSim_CAF1 9844 85 - 1
CAAAAUCUUCCUAGUAAGCACUCUUAAGCUUUUGUAAUCACUGU--ACUAAGCAGUGUUGAUCAGUUCGUUAGGAAGCUUAUCCU--------------------------------UU
......((((((((..(((........((....))...((((((--.....)))))).......)))..))))))))........--------------------------------.. ( -19.70)
>DroEre_CAF1 8151 83 - 1
CUA------------AAUCACCAUUAAACUUUUGAAAUCACUGU--ACCAAGCAGUGUUGAUCAGUUCGUAAGAAAGCUUAUUCAUUG----------------------UUAAUCUUU
...------------...........(((...((((..((((((--.....))))))........(((....)))......))))..)----------------------))....... ( -12.40)
>DroYak_CAF1 7758 117 - 1
GGAAAGUUGCUUAGAAAACAUUGCUUAGCUUUUGUAAUCACUGU--ACUAAGCAGUGCUGAUCAGCGCGUUAGGAAGCUUAUCCUGUGAACUCGAGUUUAUGAACUUUGUAUAAUCUUU
((((((((.(((((.......(((((((.....((....))...--.)))))))(((((....))))).))))).))))).))).((((((....)))))).................. ( -26.80)
>consensus
CAAAAUCUUCCUAG_AAGCACUCUUAAGCUUUUGUAAUCACUGU__ACUAAGCAGUGUUGAUCAGUUCGUUAGAAAGCUUAUCCU_UG__________________________UCUUU
........................(((((((((.....((((((.......))))))..((.....))....)))))))))...................................... (-11.71 = -12.03 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:22 2006