| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,310,272 – 8,310,385 |
| Length | 113 |
| Max. P | 0.820901 |
| Location | 8,310,272 – 8,310,385 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.98 |
| Mean single sequence MFE | -33.30 |
| Consensus MFE | -25.52 |
| Energy contribution | -25.63 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.820901 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8310272 113 - 22224390 AU-------CUCCAUCUCCGCUGGUCCCACAUUCCGGGCUCCAAUGGCCAACAGACGCCAUUUUCGACCGCCCAUCUCACUCCCUCUUGUGGCGGAGGUGGUGGCCGCCGCUACACUGAG ..-------((((((((((((..............((((((.((((((........))))))...))..))))....(((........))))))))))))(((((....)))))...))) ( -39.20) >DroSec_CAF1 3460 100 - 1 AUCUCUGAUCUCCAUCUCCGCUGGGCCCACAUUCCGGGCUCUAAUGGCCAACAGACGUCAUUUU-----------------CCCUCUUGUGGU---GGUGGUGACCCACGCUACACUGAG ........((.(((((.((((.((((((.......)))))).((((((........))))))..-----------------.......)))).---))))).))................ ( -29.00) >DroSim_CAF1 3486 93 - 1 AU-------CUCCAUCUCCGCUGGGCCCACAUUCCGGGCUCUAAUGGCCAACAGACGCCAUUUU-----------------CCCCCUUGUGGU---GGUGGUGACCCACGCUACACUGAG .(-------(.(((((.((((.((((((.......)))))).((((((........))))))..-----------------.......)))).---))))).))................ ( -31.70) >consensus AU_______CUCCAUCUCCGCUGGGCCCACAUUCCGGGCUCUAAUGGCCAACAGACGCCAUUUU_________________CCCUCUUGUGGU___GGUGGUGACCCACGCUACACUGAG .........(((.....((((.((((((.......)))))).((((((........))))))..........................)))).....((((((.....))))))...))) (-25.52 = -25.63 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:20 2006