Locus 3115

Sequence ID X_DroMel_CAF1
Location 8,309,623 – 8,309,715
Length 92
Max. P 0.655025
window5095

overview

Window 5

Location 8,309,623 – 8,309,715
Length 92
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 74.38
Mean single sequence MFE -23.17
Consensus MFE -8.02
Energy contribution -8.39
Covariance contribution 0.36
Combinations/Pair 1.07
Mean z-score -2.18
Structure conservation index 0.35
SVM decision value 0.25
SVM RNA-class probability 0.655025
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8309623 92 - 22224390
UGCUUACGCUCCUGGUCAUAAAAAUAAAAGCAC---CAAGCUUUAGUCAGCUGUGCAAAAGCUGCCGGA--GAAUCAGGUAAAAG-CCAAAGCGAGUU
.((((..((((((((((.........(((((..---...))))).(.(((((.......))))).)...--).))))))....))-)..))))..... ( -23.40)
>DroSec_CAF1 2799 83 - 1
CAACUACGCUCCUGAUCAUAAAAAUAAAAGCAC---CAAGCUUUAGUCAGCUGUGCAAAAGCUGCCA-----AAUCAGGUAAAA-------GCGAGUU
.((((.((((((((((..........(((((..---...))))).(.(((((.......))))).).-----.))))))....)-------))))))) ( -24.10)
>DroSim_CAF1 2774 83 - 1
CGCCUACGCUCCUGGUCAUAAAAAUAAAAGCAC---CAAGCUUUAGUCAGCUGUGCAAAAGCUGCCA-----AAUCAGGUAAAA-------GCGAGUU
......((((((((((..........(((((..---...))))).(.(((((.......))))).).-----.))))))....)-------))).... ( -21.50)
>DroEre_CAF1 3001 86 - 1
UGCUUACGCUCCUGUACCUUAAAA------AACGCCUAAGCUUUAGACAGCUGUGAAAAAGCUGUCG-----AAUCAGGUAAAAG-CCAAAGCGAGUU
.((((..(((....(((((.....------...((....))....(((((((.......))))))).-----....)))))..))-)..))))..... ( -23.70)
>DroYak_CAF1 2844 83 - 1
CGCCUACGCUCCUGGCCAUGAAAA------CAC---CAAGCUUUAGUCAGCUGUGAAAAAGCUGCCA-----AAUCAGGUAAAAG-CCAAAGCGAGUU
......((((..((((........------(((---..((((......))))))).......((((.-----.....))))...)-))).)))).... ( -19.70)
>DroAna_CAF1 2915 90 - 1
CACCGCCGUCACUGGCCAGAGGGAA-----AGG---GGAGCUUUGGUCAGCUGUGCAAAAGCUGCCAAAACGAAGCAGGUAACAGGCGAGAGAGAGUU
...((((((((((((((((((....-----...---....)))))))))).)).)).....((((.........))))......)))).......... ( -26.60)
>consensus
CGCCUACGCUCCUGGUCAUAAAAAU_____CAC___CAAGCUUUAGUCAGCUGUGCAAAAGCUGCCA_____AAUCAGGUAAAAG_CCAAAGCGAGUU
......(((.((((.........................((....))(((((.......)))))...........))))............))).... ( -8.02 =  -8.39 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:19 2006