Locus 3113

Sequence ID X_DroMel_CAF1
Location 8,306,806 – 8,306,917
Length 111
Max. P 0.811782
window5093

overview

Window 3

Location 8,306,806 – 8,306,917
Length 111
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 75.26
Mean single sequence MFE -38.77
Consensus MFE -24.44
Energy contribution -26.20
Covariance contribution 1.76
Combinations/Pair 1.36
Mean z-score -1.49
Structure conservation index 0.63
SVM decision value 0.65
SVM RNA-class probability 0.811782
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8306806 111 + 22224390
AUGAGCGCCACGACUAGAACACCUGCCACACCGGGGACACCUGGCACUCCCGGCAGCCUGGCCAUGGAAGUGGCCCGCGUCCAGAAUUCAGCACUCGCCGAGUUUAAAAAG
.((..(((..............(((((...(((((....))))).......)))))...((((((....)))))).)))..))((((((.((....)).))))))...... ( -36.50)
>DroPse_CAF1 1 94 + 1
-----------------AAUGUCUGAGACGCCACGUACACCUGGCACCCCCGGCAGCCUGGCCAUGGAGAUGGUCAAGGCCCAGAACACUGCUCUGGCAGAUUUCAAGAAG
-----------------....(((((((.((((.(....).))))......((..((((((((((....)))))).))))))......((((....)))).)))).))).. ( -29.50)
>DroSec_CAF1 2 111 + 1
AUGAGUGCCACGACUAGAACACCUGUCACACCGGGCACACCUGGCACUCCCGGCAGCCUGGCCAUGGAAGUGGCCCGCGUCCAGAAUUCAGCCCUCGCCGAGUUCAAAAAG
..((((((((.(((.((.....))))).....((.....))))))))))..((..((..((((((....)))))).))..)).((((((.((....)).))))))...... ( -40.30)
>DroEre_CAF1 121 111 + 1
AUGAGCGUCACACCACGCACACCUGCCACUCCGGGCACACCUGGAACUCCUGGCAGCAUAGCCAAGGAAGUGGCCCGCAUCCAGAAUUCGGCCCUGGCCGAGUUCAAGAAG
.((.((((......)))).))...(((((((((((....))))))..(((((((......))).)))).))))).........(((((((((....)))))))))...... ( -47.00)
>DroYak_CAF1 1 111 + 1
AUGAGCGCCACACCACGAACACCUGCCACACCGGGCACACCUGGCACACCCGGCAGCCUGGCCAUGGAAGUGGCCCGCGUCCAGAAUUCAGCACUCGCCGAGUUCAAGAUG
.((..(((..............(((((...(((((....))))).......)))))...((((((....)))))).)))..))((((((.((....)).))))))...... ( -37.70)
>DroAna_CAF1 1 111 + 1
AUGUCCGAGACUCCCAGGACGCCAGCCACACCGGGAACUCCCGGUACACCUGGCAGCCUAGCUAUGGAGAUGGCCCGAGCCCAGAACACGGCGCUGGCGGAAUUCAAGAAG
...(((....((((((((..(((((....((((((....))))))....)))))..))).)....))))...(((.(.(((........))).).)))))).......... ( -41.60)
>consensus
AUGAGCGCCACACCAAGAACACCUGCCACACCGGGCACACCUGGCACUCCCGGCAGCCUGGCCAUGGAAGUGGCCCGCGUCCAGAAUUCAGCACUCGCCGAGUUCAAGAAG
....(((...............(((((..((((((....))))))......)))))...((((((....))))))))).....((((((.((....)).))))))...... (-24.44 = -26.20 +   1.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:17 2006