Locus 3111

Sequence ID X_DroMel_CAF1
Location 8,293,603 – 8,293,723
Length 120
Max. P 0.629080
window5091

overview

Window 1

Location 8,293,603 – 8,293,723
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.37
Mean single sequence MFE -51.63
Consensus MFE -30.28
Energy contribution -32.53
Covariance contribution 2.25
Combinations/Pair 1.25
Mean z-score -1.84
Structure conservation index 0.59
SVM decision value 0.20
SVM RNA-class probability 0.629080
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8293603 120 + 22224390
GUAGGCGCUGGCAUAUGGUCCGUGGGCGUGGGCGUGCGCAUGGCUAUGGGCGUGGCCGUGGGCAUGACCAUGAUGAUAGUGAGCGGCCGCUGCGGCAGCAGCAUUAUGAUGGUAGAUCGC
...((((((.((.....(((....)))((((.(((((.(((((((((....))))))))).))))).)))).......)).))).)))(((((....))))).....(((.....))).. ( -54.40)
>DroSec_CAF1 137 108 + 1
GUAGGCGCUGGCAUAUGGGCCGUGGGCGU------------GGCUGUGGGCGUGGCCGUGGGCAUGACCAUGGUGAUAGUGAGCGGCAGCUGCGGCAGCCGCAUUAUGAUGGUAGAUCGC
....((((((.(((....(((((((.(((------------(.(..(((......)))..).)))).)))))))....(((((((((.((....)).))))).)))).))).)))..))) ( -44.80)
>DroSim_CAF1 141 108 + 1
GUAGGCGCUGGCAUAUGGGCCGUGGGCGU------------GGCUGUGGGCGUGGCCGUGGGCAUGACCAUGGUGAUAGUGAGCGGCCGCUGCGGCAGCCGCAUUAUGAUGGUAGAUCGC
....((.(((((......)))).).))((------------((((((.(..((((((((..((((.((....)).)).))..))))))))..).)))))))).....(((.....))).. ( -47.60)
>DroEre_CAF1 169 120 + 1
GUAGGCGCUGGCAUAAGGGCCGUGGGCGUGGCUGUGGGCGUGGCCGUGGGCGUGGCCGUGGGCAUGACCAUGGUGAUAGUGGGCGGCCGCAGCAGCGGCGGCAUUGUGGUGGUAGAUCGC
...(((.((......)).)))...(.(((.(((((....((((((((..((((.(((((((......))))))).)).))..)))))))).))))).))).)...(((((.....))))) ( -57.40)
>DroYak_CAF1 141 120 + 1
GUAGGCGCUGGCAUACGGCCCAUGGGCGUGGCCGUGGGCGUGACUGUGGGCGUGGCCAUGGGCAUGACCAUGGUGAUAGUGGGCGGCGGCAGCAGCAGCCGCAUUGUGAUGGUAGAUGGC
(((.((....)).))).((((((((.((((.(((..(......)..))).)))).))))))))...(((((.(..((.....(((((.((....)).)))))))..).)))))....... ( -54.50)
>DroAna_CAF1 136 108 + 1
GUACGCCGUGGCAUAGGG------GGCAUGGCCGUGGGCAUGUCCGUGCGA------GUGGGCGUGGCCAUGGUGGUAGUGGGCGGCAGCAGCUGCCGCGGCAUUGUGAUGGUAGAUGGC
....(((((.(((...(.------.((((.(((((((.((((((((.....------.)))))))).))))))).))....((((((....))))))))..)..))).)))))....... ( -51.10)
>consensus
GUAGGCGCUGGCAUAUGGGCCGUGGGCGUGGCCGUGGGC_UGGCUGUGGGCGUGGCCGUGGGCAUGACCAUGGUGAUAGUGAGCGGCCGCAGCGGCAGCCGCAUUAUGAUGGUAGAUCGC
...(.((((.((.....(.((((((.((((.(....).)))).)))))).)((.(((((((......))))))).)).)).)))).).((.((....)).)).................. (-30.28 = -32.53 +   2.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:15 2006