Locus 311

Sequence ID X_DroMel_CAF1
Location 989,382 – 989,494
Length 112
Max. P 0.532532
window473

overview

Window 3

Location 989,382 – 989,494
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.58
Mean single sequence MFE -19.57
Consensus MFE -17.08
Energy contribution -17.72
Covariance contribution 0.64
Combinations/Pair 1.10
Mean z-score -1.35
Structure conservation index 0.87
SVM decision value -0.00
SVM RNA-class probability 0.532532
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 989382 112 - 22224390
UUCAGUUUUUU--------CCCAUUUUCGCAUUUCGCAACCAGCGUUCGAUAUUUUGAUUAGAACUCUGGUUGGACACCUCUCAGGUUGAUGAUAUCCAUCCCACCUCCAUAAACAUUUU
....((((...--------..............((.(((((((.((((.............)))).)))))))))........((((.((((.....))))..))))....))))..... ( -22.82)
>DroSec_CAF1 71978 111 - 1
UUCAGUUUCUU--------C-CAUUUUCGCAUUUCGCAACCAGCGUUCGAUAUUUUGAUUAGAACUCUGGUUGGACACCUCUCAGGUUGAUGAUAUCCAUCCUACCUCCAUUAACAUUUC
....(((...(--------(-(......((.....))((((((.((((.............)))).)))))))))........((((.((((.....))))..)))).....)))..... ( -23.42)
>DroSim_CAF1 51283 111 - 1
UUCAGUUUCUU--------C-CAUUUUCGCAUUUCGCAACCAGCGUUCGAUAUUUUGAUUAGAACUCUGGUUGGACACCUCUCAGUUUGAUGAUAUCCAUCCUACCUCCAUUAACAUUUC
....(((...(--------(-(......((.....))((((((.((((.............)))).))))))))).........((..((((.....))))..)).......)))..... ( -20.02)
>DroEre_CAF1 85422 111 - 1
UUCAUUUUUUUUU---CCCC-CAUUUUCGUAUUUCGCAAC-GGCGUUCGAUAUUUUGAUUAGAACUCUGGUUGGACACCUCUCAGGUUGA---UGA-UAUCCUACCUCCAUUAACUUUUU
.............---....-.....(((.....(((...-.)))..)))...((..(((((....)))))..))........(((((((---((.-...........)))))))))... ( -16.30)
>DroYak_CAF1 77732 117 - 1
UUCAGUUUUUCACCCCCCCC-CAUUUUCGUAUUUCGCAAC-GGCGUUCGAUAUUUUGAUUAGAACUCUGGUUGGACACCUCUCAGGUUGAUGAUGA-UAUCCUACCUCAAUUAACUUUUC
.(((.....(((.((.....-.....(((.....(((...-.)))..)))...((..(((((....)))))..)).........)).)))...)))-....................... ( -15.30)
>consensus
UUCAGUUUUUU________C_CAUUUUCGCAUUUCGCAACCAGCGUUCGAUAUUUUGAUUAGAACUCUGGUUGGACACCUCUCAGGUUGAUGAUAUCCAUCCUACCUCCAUUAACAUUUC
.................................((.(((((((.((((.............)))).)))))))))........((((.((((.....))))..))))............. (-17.08 = -17.72 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:26 2006