| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,278,386 – 8,278,503 |
| Length | 117 |
| Max. P | 0.531960 |
| Location | 8,278,386 – 8,278,503 |
|---|---|
| Length | 117 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.11 |
| Mean single sequence MFE | -34.85 |
| Consensus MFE | -20.96 |
| Energy contribution | -20.77 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.60 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.531960 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8278386 117 - 22224390 ACCAUUCCCGGAUCUGCGGUGCAACCAGUUGGUUGUCUAC---CACUUGUACUACAUCGCCCUGAACACCGCCAUCUCAGUGGUGUUCUUCCUGGUCCAUUCCAUUCAGGAGCUGCUGCU .........(((((.((((((....(((.((((.....))---)).))).....))))))...(((((((((.......))))))))).....)))))..(((.....)))((....)). ( -36.30) >DroSec_CAF1 4740 117 - 1 ACCAUUCACGGAUCUGCGGUGCAACCAGUUGGUUGUCUAC---CACUUGUACUACAUCGCCAUCGCCACCGCCAUCUCAGUGGUGUUCUACCUGGUCCAUUCCAUCCAGGAGCUGCUCCU .........(((.(.(((((((((((....))))))..))---)......................((((((.......)))))).....(((((..........))))).)).).))). ( -31.80) >DroAna_CAF1 27589 108 - 1 GCCGUUCGUGGACGCCUGGUGCAAUGACUUCA---UCUACGUGUACAUGUACUUCAUUGCCCUGACCACCGGAGUGGCGGUGGCCUUCUUCCUGAGCCACUCCUGCCAC---------CA .(((...((((...(..((.(((((((...((---(.((....)).)))....))))))))).).))))))).((((((((((((........).))))))...)))))---------.. ( -36.60) >DroSim_CAF1 15832 117 - 1 ACCAUUCACGGAUGUGCGGUGCAACCAGUUGGUUGUCUAC---CACUUGUACUACAUCGCAAUCGCCACCGGCAUCUCAGUGGUGUUCUACCUGGCCCAUUCCAUCCAGGAGCUGCUCCU .........((((((((((((....(((.((((.....))---)).))).....)))))))...((((..((((((.....)))))).....))))......)))))(((((...))))) ( -34.70) >consensus ACCAUUCACGGAUCUGCGGUGCAACCAGUUGGUUGUCUAC___CACUUGUACUACAUCGCCAUCACCACCGCCAUCUCAGUGGUGUUCUACCUGGUCCAUUCCAUCCAGGAGCUGCUCCU ((((((...((((..(((((((((((....)))))............((.....))..........)))))).)))).))))))......(((((..........))))).......... (-20.96 = -20.77 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:01 2006