| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,277,934 – 8,278,039 |
| Length | 105 |
| Max. P | 0.957364 |
| Location | 8,277,934 – 8,278,039 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 89.25 |
| Mean single sequence MFE | -27.44 |
| Consensus MFE | -22.89 |
| Energy contribution | -23.33 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -3.37 |
| Structure conservation index | 0.83 |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.957364 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8277934 105 + 22224390 CUGUGCGGUUUUUUUGAAAACGUCAGUUUUGAAAAAAAAAAACCAGAACUGGCGAUUUCAAGCACCGAGCGUCGUUUGUCUUUCAAUAUUUAUCAAAAAAAAAAC ..((.((((...(((((((.(((((((((((............))))))))))).))))))).)))).))................................... ( -26.10) >DroSec_CAF1 4317 97 + 1 CUGUGCGGUUU--UUGAAAACCUCAGUUUUGGAAU--AAAAACCAGAACUGGCGAUUUCAAGCAUCGAGCCUCGUUUGUCUUUCAAUAUUUACCAAAA----AUC ..((.((((.(--((((((.(.((((((((((...--.....)))))))))).).))))))).)))).))............................----... ( -23.00) >DroSim_CAF1 15401 97 + 1 CUGUGCGGUUU--UUGAAAACGUCAGUUUUGGAAU--AAAAACCAGAACUGGCGUUUUCAAGCAUCGAGCCUCGUUUGUCUUUCAAUAUUUAACAAAA----AUC ..((.((((.(--(((((((((((((((((((...--.....)))))))))))))))))))).)))).))....(((((.............))))).----... ( -33.22) >consensus CUGUGCGGUUU__UUGAAAACGUCAGUUUUGGAAU__AAAAACCAGAACUGGCGAUUUCAAGCAUCGAGCCUCGUUUGUCUUUCAAUAUUUAACAAAA____AUC ..((.((((....((((((.((((((((((((..........)))))))))))).))))))..)))).))................................... (-22.89 = -23.33 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:00 2006