Locus 3101

Sequence ID X_DroMel_CAF1
Location 8,273,912 – 8,274,014
Length 102
Max. P 0.990358
window5072

overview

Window 2

Location 8,273,912 – 8,274,014
Length 102
Sequences 3
Columns 102
Reading direction forward
Mean pairwise identity 74.26
Mean single sequence MFE -29.26
Consensus MFE -20.80
Energy contribution -21.47
Covariance contribution 0.67
Combinations/Pair 1.10
Mean z-score -1.88
Structure conservation index 0.71
SVM decision value 2.21
SVM RNA-class probability 0.990358
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8273912 102 + 22224390
AGCAGCUCCCUCCACCUCCUCCUCAUCGUCCUCAUCCGGGGAUAAUAUCUGUGCCAAUGCCCGUCGCCGGGCCACCGAAUGCUGGGCAACCAAGCUGCAGAA
.((((((....................((((((....))))))....((.(((.....(((((....)))))))).))....(((....))))))))).... ( -32.80)
>DroWil_CAF1 17816 90 + 1
AGCAACA---------GCAUCAUC---AACAUCGACGGGAGAAAGCAUUUGUGCCAAUGCCCGACGACGAGCCACUGAAUGUUGGGCAACCAAAUUGCAAAA
.((((((---------(.....((---....(((.((((.....(((....))).....)))).))).))....)))....((((....)))).)))).... ( -23.90)
>DroYak_CAF1 11338 99 + 1
AGCAGCUCCCUCCACCUCCUCCUC---UUCCUCAUCUGGGGAUAAUAUCUGUGCCAAUGCCCGUCGCCGGGCAACCGAAUGCUGGGCCACCAAGCUGCAGAA
.((((((.....(((.........---.(((((....)))))........))).....(((((.((.(((....)))..)).))))).....)))))).... ( -31.07)
>consensus
AGCAGCUCCCUCCACCUCCUCCUC___AUCCUCAUCCGGGGAUAAUAUCUGUGCCAAUGCCCGUCGCCGGGCCACCGAAUGCUGGGCAACCAAGCUGCAGAA
.((((((......................((((....)))).................(((((.((.(((....)))..)).))))).....)))))).... (-20.80 = -21.47 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:58 2006