Locus 3100

Sequence ID X_DroMel_CAF1
Location 8,272,897 – 8,272,994
Length 97
Max. P 0.742657
window5071

overview

Window 1

Location 8,272,897 – 8,272,994
Length 97
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 71.49
Mean single sequence MFE -34.12
Consensus MFE -17.74
Energy contribution -17.06
Covariance contribution -0.68
Combinations/Pair 1.24
Mean z-score -1.73
Structure conservation index 0.52
SVM decision value 0.45
SVM RNA-class probability 0.742657
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8272897 97 - 22224390
CAGCGCAAUUUCGCGCAGCUUCAGGUGACAGCCGACGCUAAACGAGCAGACCACAUUGUUUAUCACAAUGUCCAGCUCGUGCUCAUUAUCAG--CA----AUU-----------------
..((((......))))(((.((.(((....))))).)))..((((((.....(((((((.....)))))))...))))))(((.......))--).----...----------------- ( -29.60)
>DroAna_CAF1 19966 113 - 1
CAGGGCGAUGUCCCGCAGCUUCAGGUGGCAUCGGACACUAAAGGAGCACACCACAUUGUUGAUGACGAUGUCCAGUUCGGGUUCUUCAGUGCCGGU----AGUC---UCAGUGGUUGCGG
..((((...))))(((((((....(.((((((((.((((.(((((.(..((.((((((((...))))))))...))...).))))).)))))))))----.)))---.)...))))))). ( -40.30)
>DroSim_CAF1 12119 97 - 1
CAGCGCAAUAUCGCGCAGCUUCAGGUGGCAGCCGACGCUAAACGAGCAUACCACAUUGUUUAUCACAAUGUCCAGCUCGGGCUCAUUAUCAG--CC----AUU-----------------
..((((......))))(((.((.(((....))))).)))...(((((.....(((((((.....)))))))...)))))((((.......))--))----...----------------- ( -32.00)
>DroWil_CAF1 16756 116 - 1
CAGGGCAAUCUCCCGCAACUUGAGAUGACAUCGCACACUAAACGAGCAGACAACAUUAUUGAUAACAAUGUCAAGUUCGGGCUCAACUUCAGUUUCUUCGAUUGCUU---UUGCGCCCG-
..((((((((.((((.(((((((..((...(((.........))).))........(((((....))))))))))))))))...(((....))).....))))((..---..)))))).- ( -28.20)
>DroYak_CAF1 10327 115 - 1
CAGCGCAAUAUCGCGCAGCUUCAGGUGGCAGCCAACGCUAAACGAGCAGACCACAUUGUUGAUCACAAUGUCCAGCUCGGGCUCAUCAUCGGAGGC----AUUGCCAUCAUUGGCCGCG-
..((((......)))).(((((.(((((.((((.........(((((.....(((((((.....)))))))...)))))))))..))))).)))))----...((((....))))....- ( -40.50)
>consensus
CAGCGCAAUAUCGCGCAGCUUCAGGUGGCAGCCGACGCUAAACGAGCAGACCACAUUGUUGAUCACAAUGUCCAGCUCGGGCUCAUCAUCAG__CC____AUU________UG____CG_
..(((......)))((.......((((........))))...(((((.....(((((((.....)))))))...))))).))...................................... (-17.74 = -17.06 +  -0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:58 2006