Locus 31

Sequence ID X_DroMel_CAF1
Location 126,081 – 126,200
Length 119
Max. P 0.983258
window37

overview

Window 7

Location 126,081 – 126,200
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.99
Mean single sequence MFE -42.91
Consensus MFE -37.30
Energy contribution -38.74
Covariance contribution 1.44
Combinations/Pair 1.11
Mean z-score -1.87
Structure conservation index 0.87
SVM decision value 1.94
SVM RNA-class probability 0.983258
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 126081 119 + 22224390
CUGACCACCUGGACCAGCUGCGGCUCUUGGCCAGGACCUCCUUGGAUCAUCAUCUGGUGCAUUCCAGGCGACAUGGUGAUGGUCUCCAGCUGGUCGCCAUUCUCCACCUUUCAGGAGAU-
...........(((((((((.(((.....)))(((....))).(((((((((((((.(((.......))).)).))))))))))).))))))))).....(((((........))))).- ( -47.60)
>DroSec_CAF1 14220 118 + 1
CUGACCACCUGUACCAGCUGGGGCUCUUGUCCAUGACCUCCUUGGAUCAUCAUCUGGUGCAUUCCAGGCGACAUGGUGAUGGUCUCCAGCUGAUCGCAUUCUUCCACGUUUCAGGAGU--
.......((((.(((((((((((((.(((.(((((...((((((((.((((....))))...)))))).)))))))))).)))).)))))))...(........)..))..))))...-- ( -38.80)
>DroSim_CAF1 19748 120 + 1
CUGACCACCUGUACCAGCUGGGGCUCUUGGCCAGGACCUCCUUGGAUCAUCAUCUGGUGCAUUCCAGGCGACAUGGUGAUGGUCUCCAGCUGAUCGCCAUUCUCCACCUUUCAGGAGGUA
...(((.((((...((((((((((.....)))(((....))).(((((((((((((.(((.......))).)).))))))))))))))))))...(........)......)))).))). ( -43.10)
>DroEre_CAF1 20811 120 + 1
CUGACCACCUGUACCAGCUGGGGCUCUUGGCCAGGACCUCCCUGAAUCAUCAUCUGAUGCAUACCAGGCGACAUGGUGAUGGUCUCCAGCUGGUCGCCAUUUUCCACCUUUCGGGAUGUA
..........(((((((((((((........((((.....)))).(((((((((((.(((.......))).)).)))))))))))))))))))).))....((((.......)))).... ( -40.40)
>DroYak_CAF1 17172 120 + 1
CUGACCACCUGUACCAGCUGGGGUUCUUGGCCAGGACCUCCCUGGAUCAUCAUCUGGUGCAUUCCAGGCGACAUGGUGAUGGUCUCCAGCUGGUCGCCAUUCUCCACCUUUCAGGAUUUG
.......((((.(((((((((((......((((..(((((((((((.((((....))))...)))))).))...)))..))))))))))))))).................))))..... ( -44.67)
>consensus
CUGACCACCUGUACCAGCUGGGGCUCUUGGCCAGGACCUCCUUGGAUCAUCAUCUGGUGCAUUCCAGGCGACAUGGUGAUGGUCUCCAGCUGGUCGCCAUUCUCCACCUUUCAGGAGGU_
..........(.(((((((((((......((((..(((((((((((.((((....))))...)))))).))...)))..)))))))))))))))).....(((((........))))).. (-37.30 = -38.74 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:50 2006