Locus 3098

Sequence ID X_DroMel_CAF1
Location 8,268,920 – 8,269,023
Length 103
Max. P 0.719013
window5067

overview

Window 7

Location 8,268,920 – 8,269,023
Length 103
Sequences 3
Columns 115
Reading direction reverse
Mean pairwise identity 74.17
Mean single sequence MFE -29.18
Consensus MFE -16.25
Energy contribution -15.27
Covariance contribution -0.98
Combinations/Pair 1.39
Mean z-score -1.86
Structure conservation index 0.56
SVM decision value 0.39
SVM RNA-class probability 0.719013
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8268920 103 - 22224390
UCUCUAGCUACUU---GGUAUUCUUCAAGUAUUCGAGUCGGGGAACCAUCCCCCU---------UUUUGACGCUACAGUUGUUUUAGGGAGACGAAGUUCAAUUAUAUUUCAUUG
.((.(((((((((---((......))))))).(((((..(((((....)))))..---------.))))).)))).)).........(....)(((((........))))).... ( -25.40)
>DroSim_CAF1 7035 103 - 1
UCCCUAGCUACUU---GGUAUUCUCCAACUGCUCGAUCCGGGGAAGCAUCCUCCC---------UUUGGACGCUACAGUUGUUUUAGGGAGACGAAGUUUUAUUAUAUUUCAUUG
(((((((((....---)))......((((((..((.((((((((.......))))---------)..)))))...))))))...))))))...(((((........))))).... ( -28.00)
>DroYak_CAF1 5940 115 - 1
UCCCUAGCUGGUGGAGGGGGUUCUUCAAAUUCUCGAUUCGGGGGUAUAUUCCCCUGAUCGUCGUUUUUAUUUCUACAGUUGUUUUAGGGAGAUGAUGUUAAAUUAUAGUUCAUUG
((((((((((.(((((((((((.....)))))))((((((((((......)))))))..))).........)))))))).....))))))(((((..............))))). ( -34.14)
>consensus
UCCCUAGCUACUU___GGUAUUCUUCAAAUACUCGAUUCGGGGAAACAUCCCCCU_________UUUUGACGCUACAGUUGUUUUAGGGAGACGAAGUUAAAUUAUAUUUCAUUG
(((((((.........((((((.....))))))......(((((....)))))..............................)))))))...(((((........))))).... (-16.25 = -15.27 +  -0.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:54 2006