| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,266,324 – 8,266,437 |
| Length | 113 |
| Max. P | 0.898134 |
| Location | 8,266,324 – 8,266,437 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 95.87 |
| Mean single sequence MFE | -22.06 |
| Consensus MFE | -21.61 |
| Energy contribution | -20.95 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.98 |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.898134 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8266324 113 + 22224390 UGGUGCUAUUCUUCGUUCUUUAUUGAAAUUCAAGCAAUGAGCGGCAUUUGCAUUUAUUGUGCAUUUGAUUUCGCUUUUAUUGCUUCCUAUUUUCGACCCUCUUUGUAGUUGCU ....((....((.((.......((((((...(((((((((((((((..(((((.....)))))..))...))))))..))))))).....)))))).......)).))..)). ( -24.14) >DroSim_CAF1 4411 113 + 1 UGGUGCUAUUCUUUCUUCUUUAUUGAAAUUCAAGCAAUGAGCGGCAUUUGCAUUUAUUGUGCAUUUGAUUUCGCUUUUAUUGCUUCCUAUUUUCGACCCUCUUUGUAGUUGCU ....((....((..........((((((...(((((((((((((((..(((((.....)))))..))...))))))..))))))).....))))))..........))..)). ( -23.45) >DroYak_CAF1 3424 113 + 1 UGAUGCUUUUCUUCGUUCUUUAUUGAAAUUCAAGCAAUGAGCGGCAUUUGCAUUUAUUGUGCAUUUGAUUUCGUUUUUAUUGCUUCCUAUUUUUGACCCUCUUUGUAGUUGUU ...(((.....((((........))))....(((((((((((((((..(((((.....)))))..))...))))..)))))))))...................)))...... ( -18.60) >consensus UGGUGCUAUUCUUCGUUCUUUAUUGAAAUUCAAGCAAUGAGCGGCAUUUGCAUUUAUUGUGCAUUUGAUUUCGCUUUUAUUGCUUCCUAUUUUCGACCCUCUUUGUAGUUGCU ....((....((..........((((((...(((((((((((((((..(((((.....)))))..))...))))))..))))))).....))))))..........))..)). (-21.61 = -20.95 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:53 2006