Locus 3096

Sequence ID X_DroMel_CAF1
Location 8,264,853 – 8,264,944
Length 91
Max. P 0.986199
window5064 window5065

overview

Window 4

Location 8,264,853 – 8,264,944
Length 91
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 73.96
Mean single sequence MFE -26.20
Consensus MFE -21.13
Energy contribution -21.13
Covariance contribution 0.01
Combinations/Pair 1.12
Mean z-score -1.58
Structure conservation index 0.81
SVM decision value 2.03
SVM RNA-class probability 0.986199
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8264853 91 + 22224390
AAAUGCAGUUGUU---------GUUGUUGCUUUUAUUAUGAUUCACGACGUACCGCUCCGCUCCAAGAAUUUUCUGGAGAGGCAGCGAAACAGGUGCUGG
....(((.(((((---------(((((.(..((......))..))))))....((((((.(((((.((....))))))).)).)))).))))).)))... ( -28.40)
>DroSim_CAF1 2900 97 + 1
AAAUGCAGCUGUUGUUAUUGUUGUUGGUGCUAUUAUCAUGAUUCA---CGUACCGCUCCGCUCCAAGAAUUUUCUGGAGAGGCAGCGAAACAGGUGCUGG
....(((.(((((............(((((....((....))...---.)))))(((((.(((((.((....))))))).)).)))..))))).)))... ( -30.80)
>DroYak_CAF1 2016 74 + 1
AAAUGCAGUUGUU---------AC--------------UGAUUCA---CAUACCGCUCCACUGUACGAAUUUUCUGGAGAGGGAGCGAAACAGGUGCUGA
....(((.(((((---------..--------------((.....---))...((((((.((.((.((....)))).))..)))))).))))).)))... ( -19.40)
>consensus
AAAUGCAGUUGUU_________GUUG_UGCU_UUAU_AUGAUUCA___CGUACCGCUCCGCUCCAAGAAUUUUCUGGAGAGGCAGCGAAACAGGUGCUGG
....(((.(((((........................(((........)))..((((((.(((((.((....))))))).)).)))).))))).)))... (-21.13 = -21.13 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 8,264,853 – 8,264,944
Length 91
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 73.96
Mean single sequence MFE -22.01
Consensus MFE -16.22
Energy contribution -16.67
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -1.72
Structure conservation index 0.74
SVM decision value 1.96
SVM RNA-class probability 0.984081
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8264853 91 - 22224390
CCAGCACCUGUUUCGCUGCCUCUCCAGAAAAUUCUUGGAGCGGAGCGGUACGUCGUGAAUCAUAAUAAAAGCAACAAC---------AACAACUGCAUUU
....(((.(((.(((((.((.(((((((....)).))))).))))))).)))..))).............(((.....---------......))).... ( -22.70)
>DroSim_CAF1 2900 97 - 1
CCAGCACCUGUUUCGCUGCCUCUCCAGAAAAUUCUUGGAGCGGAGCGGUACG---UGAAUCAUGAUAAUAGCACCAACAACAAUAACAACAGCUGCAUUU
...(((.((((((((((.((.(((((((....)).))))).)))))))..((---((...)))).......................))))).))).... ( -26.60)
>DroYak_CAF1 2016 74 - 1
UCAGCACCUGUUUCGCUCCCUCUCCAGAAAAUUCGUACAGUGGAGCGGUAUG---UGAAUCA--------------GU---------AACAACUGCAUUU
...(((.(((.(((((..((.(((((..............))))).))...)---)))).))--------------).---------......))).... ( -16.74)
>consensus
CCAGCACCUGUUUCGCUGCCUCUCCAGAAAAUUCUUGGAGCGGAGCGGUACG___UGAAUCAU_AUAA_AGCA_CAAC_________AACAACUGCAUUU
...(((..((((..(((.((.(((((((....)).))))).)))))(((.(.....).)))..........................))))..))).... (-16.22 = -16.67 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:52 2006