Locus 3095

Sequence ID X_DroMel_CAF1
Location 8,261,675 – 8,261,788
Length 113
Max. P 0.547826
window5063

overview

Window 3

Location 8,261,675 – 8,261,788
Length 113
Sequences 3
Columns 113
Reading direction forward
Mean pairwise identity 95.21
Mean single sequence MFE -33.47
Consensus MFE -26.83
Energy contribution -26.17
Covariance contribution -0.66
Combinations/Pair 1.09
Mean z-score -2.31
Structure conservation index 0.80
SVM decision value 0.03
SVM RNA-class probability 0.547826
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8261675 113 + 22224390
UGUCUGCUUCUUUGCUUUCUUCUUCUUGGCGUCUCUUCUUCGCUUUUGUGCAAAGGAGGAGCGUUUAAAAGAAAAGGGGAGAAGGUUAGGCACUUGGCAAAAAAGAAUAUACC
(((((((((....((((((((((((((.((((..((((((.((......)).))))))..))))....))))....)))))))))).)))))...)))).............. ( -34.90)
>DroSec_CAF1 11983 108 + 1
UGUCUGCUUCUUCGCUUUCUUCUUCUUGGCGUCUCUUCU--GCUUUUGUGCAAAG---GAGCGUUUAAAAGAAAAGGGGAGAAGGUUAGACACUUGGCAAAAAAGAAUAUACC
(((((((((((((.((((..((((...((((.(((((.(--((......))).))---)))))))...)))))))).)))))))..))))))(((.......)))........ ( -34.00)
>DroYak_CAF1 15904 108 + 1
UGUCUGCUUCUUCGCUUUCUUCUUCUUGGCGUCUCUUCU--GCUUUUGUGCAAAG---GAGUGUUUAAAAGAAAAGGGGAGAAGGUUAGGCACUUGGCAAAAAAGAAUAUACC
(((((((((((((.((((..((((...((((.(((((.(--((......))).))---)))))))...)))))))).)))))))..))))))(((.......)))........ ( -31.50)
>consensus
UGUCUGCUUCUUCGCUUUCUUCUUCUUGGCGUCUCUUCU__GCUUUUGUGCAAAG___GAGCGUUUAAAAGAAAAGGGGAGAAGGUUAGGCACUUGGCAAAAAAGAAUAUACC
(((((((((((((.((((..((((...((((.(((..((..((......))..))...)))))))...)))))))).)))))))..))))))(((.......)))........ (-26.83 = -26.17 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:51 2006