Locus 3090

Sequence ID X_DroMel_CAF1
Location 8,244,082 – 8,244,175
Length 93
Max. P 0.819576
window5052

overview

Window 2

Location 8,244,082 – 8,244,175
Length 93
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 75.94
Mean single sequence MFE -26.40
Consensus MFE -12.06
Energy contribution -12.62
Covariance contribution 0.56
Combinations/Pair 1.08
Mean z-score -2.53
Structure conservation index 0.46
SVM decision value 0.68
SVM RNA-class probability 0.819576
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8244082 93 + 22224390
UAAAACCACACUUUGAAUUCGAAAUCAACCCUAACACAGUCUGUUCC---UCGGCUGUUAACUAACA------------------------GCCCGGCUUGAUCAUGCAUUCGACCGAUU
............((((((.((..(((((.((.((((.....))))..---..(((((((....))))------------------------))).)).)))))..)).))))))...... ( -20.50)
>DroSec_CAF1 145170 88 + 1
-------ACACUUUAAAUUCGAACUCAAGCCUAACAGAGUCUGUUCC-CCCCGGCUGUUAACUAACA------------------------GCCCGGCUUGAUCGUGCACUCGACCGAUU
-------...........(((...(((((((.(((((...)))))..-....(((((((....))))------------------------))).)))))))(((......))).))).. ( -25.80)
>DroSim_CAF1 108977 88 + 1
-------ACACUUUAAAUUCGAACUCAAGCCUAACAGAGUCUGUUCC-CCCCGGCUGUUAACUAACA------------------------GCCCGGCUUGAUCGUGCACUCGACCGAUU
-------...........(((...(((((((.(((((...)))))..-....(((((((....))))------------------------))).)))))))(((......))).))).. ( -25.80)
>DroEre_CAF1 134412 119 + 1
UAACAG-CCACUUUAAAUUUCAAUUCAAACCUAACAGAGUCUGUUGCGGCCCGGCUGUUAACUAACAGCGGCGUACGUCAGGCGCCGUCCAGCCCGGUUUGAUCGUGCAUUCGACCGAUU
......-............((...(((((((.(((((...)))))(((((((.((((((....))))))(((....))).)).))))).......)))))))(((......)))..)).. ( -33.50)
>consensus
_______ACACUUUAAAUUCGAACUCAAGCCUAACAGAGUCUGUUCC_CCCCGGCUGUUAACUAACA________________________GCCCGGCUUGAUCGUGCACUCGACCGAUU
..................(((...(((((((.(((((...))))).......(((((((....))))........................))).)))))))(((......))).))).. (-12.06 = -12.62 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:41 2006