Locus 3088

Sequence ID X_DroMel_CAF1
Location 8,242,752 – 8,242,850
Length 98
Max. P 0.527605
window5050

overview

Window 0

Location 8,242,752 – 8,242,850
Length 98
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 76.09
Mean single sequence MFE -28.38
Consensus MFE -14.58
Energy contribution -15.33
Covariance contribution 0.75
Combinations/Pair 1.30
Mean z-score -1.73
Structure conservation index 0.51
SVM decision value -0.01
SVM RNA-class probability 0.527605
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8242752 98 + 22224390
CUUUGCUGUCAUCCUGCAUCUCAACGAUUCGAGGAGUACCUUCGAGGACAUUCUCUUCAAUGUCCUCCAGUCUUAAUGUGCUCA----------------------GUUCGCUGUAAUCU
...(((.........))).......(((((((.((((((((..(((((((((......))))))))).)).......)))))).----------------------..)))....)))). ( -21.91)
>DroSec_CAF1 143840 119 + 1
CUCUGCUGUCAUCCUGCAUCUCAACGAUUUGAUGACUACCUUCGUGGACAUUCUCUUCAAUGUCCC-CAGUCUUAUUGUGCUCAUCGAUCUGAUCGAUCGAAACGAGUUCGCAGUAGUCU
((((((.((((((....(((.....)))..)))))).......(.(((((((......))))))).-).........(.((((.((((((.....))))))...)))).))))).))... ( -31.30)
>DroSim_CAF1 107631 119 + 1
CUCUGCUGUCAUCCUGUAUCUCAACAACUCGAGGAGUACCUUCGAUGACAUUCUCUUUAAUGUCCU-CAAUCUCAAUGUGCUCAUUGAUCUGAUAGAUCGAAUCGAGUUCGCAGUAGUUU
..(((((((......((......))(((((((.((((((.((.(((((((((......))))))..-..)))..)).)))))).((((((.....)))))).))))))).)))))))... ( -32.60)
>DroEre_CAF1 132972 110 + 1
CACUGUUGUUAUCGUGCAUCUCAUCGACUCGAGGACUACCUUCCAGGACAUUCUCUUCUAUGUCCU-CAGUCUUUAUGUGCUGAUCGACCGGA---------UCGAGUUCGCAGUAGUCU
.((((((((......))).......(((((((((....)).(((.((((((........))))))(-((((........)))))......)))---------))))))).)))))..... ( -28.70)
>DroYak_CAF1 134034 110 + 1
CUCUGCUAUUAGUCUGCAUCCCAACGAUUGGGGGACUACUUUCCAGGACACUCUCUUCUAUGUCCU-CAGUCUUUAUGUGCUGAUCGAUGUGA---------UCGAGUUCGCAGUUGUCU
..((((.....((((....((((.....))))(((......))).))))((((...((.(((((.(-((((........)))))..)))))))---------..))))..))))...... ( -27.40)
>consensus
CUCUGCUGUCAUCCUGCAUCUCAACGAUUCGAGGACUACCUUCGAGGACAUUCUCUUCAAUGUCCU_CAGUCUUAAUGUGCUCAUCGAUCUGA_________UCGAGUUCGCAGUAGUCU
..(((((((......((((.........((((((.....))))))(((((((......)))))))............))))...(((................)))....)))))))... (-14.58 = -15.33 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:39 2006