| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,237,750 – 8,237,842 |
| Length | 92 |
| Max. P | 0.551963 |
| Location | 8,237,750 – 8,237,842 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 80.24 |
| Mean single sequence MFE | -17.27 |
| Consensus MFE | -14.14 |
| Energy contribution | -14.20 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.551963 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8237750 92 - 22224390 CCCUUGUCAGGUAUUUCAGCUUGUUGUUUGCUGCAGUUAUGUGUUUAACUGCCACACACA--UACA------CCGAGCACCUCCC--CCCCCCCCCCCCCUC .(((....))).......(((((.(((.((..(((((((......)))))))......))--.)))------.))))).......--............... ( -18.10) >DroSec_CAF1 138604 91 - 1 CCCUUGUCAGGUAUUUCAGCUUGUUGUUUGCUGCAGUUAUGUGUUUAACUGCCACACACA--CACACACCCCCCUAGCACCUCCC--CCGCCCC-------C ....((..(((..........((((((.((..(((((((......)))))))..)).)))--.)))......)))..))......--.......-------. ( -15.59) >DroSim_CAF1 101173 93 - 1 CCCUUGUCAGGUAUUUCAGCUUGUUGUUUGCUGCAGUUAUGUGUUUAACUGCCACACACACACACACACCCCCCUAGCACCUCCU--CCGCCCC-------C ....((..(((..........((((((.((..(((((((......)))))))..)).))).)))........)))..))......--.......-------. ( -16.47) >DroAna_CAF1 194599 93 - 1 CCCUUGUCAGGUAUUUCAGCUUGUUGUUUGCUGCAGUUAUGUGUUUAACUGCCACACACA--C--AUACCCCUUAGGUAUCUAGGUAUCGUC-----CCCCG .(((....((((((((.((..(((.((.((..(((((((......)))))))..)).)))--)--).....)).))))))))))).......-----..... ( -18.90) >consensus CCCUUGUCAGGUAUUUCAGCUUGUUGUUUGCUGCAGUUAUGUGUUUAACUGCCACACACA__CACACACCCCCCUAGCACCUCCC__CCGCCCC_______C ..((((.(((((......))))).(((.((..(((((((......)))))))..)).))).............))))......................... (-14.14 = -14.20 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:36 2006