| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,230,613 – 8,230,706 |
| Length | 93 |
| Max. P | 0.757421 |
| Location | 8,230,613 – 8,230,706 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 90.55 |
| Mean single sequence MFE | -24.90 |
| Consensus MFE | -21.85 |
| Energy contribution | -21.97 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.757421 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8230613 93 + 22224390 AGUGGUUGACUCGGAUUAGCAGCGUUGACUAACGAAUGAGUGAGCAUGGUAGUGCAUUAUGUAUGACCGGUGUGGGCUAAUUUGAUUGAAACA .((..(..(.((((((((((.(((((.(((........))).))).((((.((((.....)))).))))..))..)))))))))))..).)). ( -26.90) >DroSec_CAF1 131582 86 + 1 -------GACUCGGAUUAGCAGCGUUGACUAACGAAUGAGUGAGCAUGGGAGUGCAUUAUGUAUGACCGGUGUGGGCUAAUUUGAUUGAAACA -------...((((((((((.(((((.(((........))).))).(((..((((.....))))..)))..))..))))))))))........ ( -25.10) >DroEre_CAF1 120710 85 + 1 ----GUUGACUCGGAUUAGCAGCGUUGACUAACGAAUGAGUGGGCA--GGAGUGCAUUAUGUAUGACCGGUGUGGGCUAAUUUGAUUGAAA-- ----.(..(.((((((((((.(((((.(((........))).))).--((.((((.....))))..))...))..)))))))))))..)..-- ( -22.70) >consensus ____GUUGACUCGGAUUAGCAGCGUUGACUAACGAAUGAGUGAGCAUGGGAGUGCAUUAUGUAUGACCGGUGUGGGCUAAUUUGAUUGAAACA ..........((((((((((.(((((.(((........))).)))..((..((((.....))))..))...))..))))))))))........ (-21.85 = -21.97 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:31 2006