| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,227,563 – 8,227,666 |
| Length | 103 |
| Max. P | 0.913585 |
| Location | 8,227,563 – 8,227,666 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 82.77 |
| Mean single sequence MFE | -34.42 |
| Consensus MFE | -24.12 |
| Energy contribution | -24.48 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.913585 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8227563 103 + 22224390 UCC-----CACAUUCCUGUGCGGUUUUUUCGUUCACCGCG-CUCACUGGCUCUUUUGUCAGUUC--CUUGACAAGCCCUGGGCCAGAAUCU---CGUCCAGCUUAAGGAGCCAG ...-----.........(((((((..........))))))-)...((((((((((((((((...--.)))))))...((((((.((...))---.))))))....))))))))) ( -36.90) >DroSec_CAF1 128599 102 + 1 UCC-----CACAUUCCUGUGCGGUUUUUU-GUUCGCCGCG-CUCACUGGCUCUUUUGUCAGUUC--CUUGACAAGCCCUGGGCCAGAAUCU---CGUCCAGCUUAAGGAGCCAG ...-----.........(((((((.....-....))))))-)...((((((((((((((((...--.)))))))...((((((.((...))---.))))))....))))))))) ( -37.30) >DroEre_CAF1 117841 102 + 1 UUC-----CACAUUCCUGUGUGGUUUUUU-GUUCGCCGCG-CUCCCUGGCGCUUUUGUCAGUUC--CUUGACAGGGAUUGGGCCAGAAUCU---CGUCCAGCUUAAGGAGCCGG ..(-----(((((....))))))......-.....(((.(-((((((((((.((((((((((((--((....)))))))))..)))))...---)).)))).....)))))))) ( -35.60) >DroYak_CAF1 119205 103 + 1 UUC-----CACAUUCCUGUGCGGUUUUUU-GCUCGCCGCGACUCUCUGGCUCUUUUGUCAGUUC--CUUGACAAGGCCUGCACCAGAAUCU---CGUCCAGCUUAAGGAGCCAG ...-----..........((((((.....-....)))))).....((((((((((((((((...--.))))))((((.((.((.((...))---.)).)))))))))))))))) ( -29.50) >DroAna_CAF1 180004 107 + 1 UCCCCUCGCACAUUCCUGUGCGGUUUU-U-GUUCACUUUG-GGCC----CUCUUUUGUCAAAAACUCGUGACAAGGUCUGGGCCAGAAUCUCCCCGUCCGGCUUAAGGCGCCCG .....(((((((....)))))))....-.-.........(-((((----((....(((((........)))))(((.((((((..(......)..))))))))).))).)))). ( -32.80) >consensus UCC_____CACAUUCCUGUGCGGUUUUUU_GUUCGCCGCG_CUCACUGGCUCUUUUGUCAGUUC__CUUGACAAGGCCUGGGCCAGAAUCU___CGUCCAGCUUAAGGAGCCAG ...................(((((..........)))))......((((((((((((((((......)))))))...((((((............))))))....))))))))) (-24.12 = -24.48 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:28 2006