| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 984,347 – 984,459 |
| Length | 112 |
| Max. P | 0.953633 |
| Location | 984,347 – 984,459 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.15 |
| Mean single sequence MFE | -35.58 |
| Consensus MFE | -13.37 |
| Energy contribution | -16.25 |
| Covariance contribution | 2.88 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.38 |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.953633 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 984347 112 - 22224390 AGAGAUCUCCGCCAGCAGAUCUAGCCCGA--------ACUGGUGGAGCCUCUUCUCCUGGCUUCUUCCGCAGUCUCGCAGUCUUCUGCUGCCCCCUCCCAAUUCACUACUGGGUUGGCUU .(((((.((((((((..(........)..--------.))))))))(((.........)))..........)))))((((....)))).(((....((((.........))))..))).. ( -34.80) >DroSec_CAF1 67052 97 - 1 GGAGAUCUCCGCCAGCCGAUCUAGCCCGACCUGGUG-ACUGGUGGAGCCUCUUCUCCUGGCUUCUUCCGCA--------GUCUUCUGCUGCCCCCUCCCAAUUUA---C----------- ((((......(((((..((....((((.(((.(...-.).))))).))....))..))))).......(((--------((.....)))))...)))).......---.----------- ( -31.70) >DroSim_CAF1 46309 108 - 1 GAAGAUCUCCGCCAGCCGAUCUAGCCCGACCUGGUG-ACUGGUGGAGCCUCUUCUCCUGGCUUCUUCCGCA--------GUCUUCUGCUGCCCCCUCCCAAUUUA---CUGGGUUGGUUU (((((.(((((((((.((..((((......))))))-.)))))))))..)))))....(((.......(((--------(....)))).)))((..((((.....---.))))..))... ( -37.60) >DroEre_CAF1 80429 105 - 1 UGG---CUUCG-CAGGAGAUUUACCCCGAAC--------UGGUGGAGCCUCUUCUGCUGGCUUCUUCCGCAGUCCCGCAGUCUUCGGCUGCCCCCUCCCGAUCCA---CUGGUUUGGUUU ...---(((..-...))).......((((((--------..(((((.......((((.((......))))))....((((.(....)))))..........))))---)..))))))... ( -33.80) >DroYak_CAF1 72632 109 - 1 GGAGAUCUCCGCCAGCAGAUCUACCCCGAACUGCUGAACUGGUACAGCCUCUUCUCCAGGCUUCUUCCGC--------AGUCUUCAGCUGCCCUCUCCCGGUUCA---CUGGUUUGGUUU ((((((((.(....).)))))).))(((((((..((((((((...(((((.......)))))......((--------(((.....)))))......))))))))---..)))))))... ( -40.00) >consensus GGAGAUCUCCGCCAGCAGAUCUAGCCCGAACUG_UG_ACUGGUGGAGCCUCUUCUCCUGGCUUCUUCCGCA_______AGUCUUCUGCUGCCCCCUCCCAAUUCA___CUGGGUUGGUUU ..((((((.(....).))))))...((((((.........((.((((((.........))))))..))(((.................)))....................))))))... (-13.37 = -16.25 + 2.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:18 2006