Locus 3079

Sequence ID X_DroMel_CAF1
Location 8,223,267 – 8,223,369
Length 102
Max. P 0.996682
window5035 window5036

overview

Window 5

Location 8,223,267 – 8,223,369
Length 102
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 94.44
Mean single sequence MFE -29.25
Consensus MFE -28.38
Energy contribution -29.13
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -3.22
Structure conservation index 0.97
SVM decision value 2.73
SVM RNA-class probability 0.996682
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8223267 102 + 22224390
GUGCCACGCCUUUGUUGGCUCUUAUUUUGGCCUUAUUUUCCUUUUUCCUUGUCGUUGAACUAACAGAGGCCGCCCUGUUGACUUUCCUAUCAGGUGGCAAUU
.(((((((((((((((((.((......((((...................))))..)).)))))))))))....(((..(......)...)))))))))... ( -28.51)
>DroSec_CAF1 124396 102 + 1
GUGCCACGCCUUUGUUGGUUCUUAUUUUGGCCUUAUUUUCCUUUUUCCCUGUCGUUGAACUAACAGAGGCCGCCCUGUUGACUUUCCUAUCAGGUGGCAAUU
.((((((((((((((((((((.......((.................)).......))))))))))))))....(((..(......)...)))))))))... ( -32.77)
>DroEre_CAF1 113803 102 + 1
GUGCCACGCCUUUGUUGGUUCCUAUUUUGCCAGUAUUUUCCUUUUUCCUUGUCGUUGAACUAACAGAGGCCUUCCUGUUGACUUUCCUAUCAGGUGGCAAUU
.((((((((((((((((((((...................................))))))))))))))....(((..(......)...)))))))))... ( -30.25)
>DroYak_CAF1 114792 102 + 1
GUGCCACGCCUUUGUUGGCUCUUAUUUGGCCCCUAUUUUCCUUUUUCCUUGUCGUUGAACUAACACAGGCCGCCCUGUUGACUUUCCUAUCAGGUGGCAAUU
.((((((((((.((((((.((.....((((....................))))..)).)))))).))))....(((..(......)...)))))))))... ( -25.45)
>consensus
GUGCCACGCCUUUGUUGGCUCUUAUUUUGCCCUUAUUUUCCUUUUUCCUUGUCGUUGAACUAACAGAGGCCGCCCUGUUGACUUUCCUAUCAGGUGGCAAUU
.((((((((((((((((((((...................................))))))))))))))....(((..(......)...)))))))))... (-28.38 = -29.13 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 8,223,267 – 8,223,369
Length 102
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 94.44
Mean single sequence MFE -26.19
Consensus MFE -23.48
Energy contribution -23.23
Covariance contribution -0.25
Combinations/Pair 1.05
Mean z-score -2.30
Structure conservation index 0.90
SVM decision value 1.47
SVM RNA-class probability 0.956908
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8223267 102 - 22224390
AAUUGCCACCUGAUAGGAAAGUCAACAGGGCGGCCUCUGUUAGUUCAACGACAAGGAAAAAGGAAAAUAAGGCCAAAAUAAGAGCCAACAAAGGCGUGGCAC
...((((((...........(((.....))).((((.((((.((((..(.....)......((.........)).......)))).)))).)))))))))). ( -25.70)
>DroSec_CAF1 124396 102 - 1
AAUUGCCACCUGAUAGGAAAGUCAACAGGGCGGCCUCUGUUAGUUCAACGACAGGGAAAAAGGAAAAUAAGGCCAAAAUAAGAACCAACAAAGGCGUGGCAC
...((((((...........(((.....))).((((.((((.((((..(....).......((.........)).......)))).)))).)))))))))). ( -25.70)
>DroEre_CAF1 113803 102 - 1
AAUUGCCACCUGAUAGGAAAGUCAACAGGAAGGCCUCUGUUAGUUCAACGACAAGGAAAAAGGAAAAUACUGGCAAAAUAGGAACCAACAAAGGCGUGGCAC
...((((((.((((......))))........((((.((((.((((..(.....)..............(((......))))))).)))).)))))))))). ( -25.50)
>DroYak_CAF1 114792 102 - 1
AAUUGCCACCUGAUAGGAAAGUCAACAGGGCGGCCUGUGUUAGUUCAACGACAAGGAAAAAGGAAAAUAGGGGCCAAAUAAGAGCCAACAAAGGCGUGGCAC
...((((((...........(((.....)))(((((.((((..(((...............))).)))).)))))........(((......))))))))). ( -27.86)
>consensus
AAUUGCCACCUGAUAGGAAAGUCAACAGGGCGGCCUCUGUUAGUUCAACGACAAGGAAAAAGGAAAAUAAGGCCAAAAUAAGAACCAACAAAGGCGUGGCAC
...((((((.((((......))))........((((.((((.((((...................................)))).)))).)))))))))). (-23.48 = -23.23 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:27 2006