| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,217,216 – 8,217,310 |
| Length | 94 |
| Max. P | 0.646885 |
| Location | 8,217,216 – 8,217,310 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 84.72 |
| Mean single sequence MFE | -35.30 |
| Consensus MFE | -27.87 |
| Energy contribution | -28.20 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.646885 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8217216 94 + 22224390 GAGCUCGUGGCUGUCGCAGCUGUCUGCCAACUACGGCGACUCGAGUUCAGUUCAGCUCCUGUCAGCCGCAGCCUCA---GCAUCA------GACUCAGCUCGA (((((.(((((((..((((..(((.(((......))))))..(((((......)))))))))))))))).((....---))....------.....))))).. ( -34.60) >DroEre_CAF1 108160 83 + 1 GAGCUCGUGGCUGUCGCAGCUGUCUGCCAACUACUGCGACUCGAGUUCAGUUCAGCUCCUGUCAGCCGCAGCCGCA---GCAUCAG----------------- (((((.((((((((.((((..((......))..))))(((..(((((......)))))..)))....)))))))))---)).))..----------------- ( -33.40) >DroYak_CAF1 108835 103 + 1 GAGCUCGUGGCUGUCGCAGCUGUCUGCCAACUACGGCGACUCGAGUUCAGUUCAGCUCCUGUCAGCCGCAGCCUCAGCAGCAUCAGCAUCAGACUCAGCUCGA (((((.(.(.(((..((.((((.(((....((.(((((((..(((((......)))))..))).)))).))...)))))))....))..))).).)))))).. ( -37.90) >consensus GAGCUCGUGGCUGUCGCAGCUGUCUGCCAACUACGGCGACUCGAGUUCAGUUCAGCUCCUGUCAGCCGCAGCCUCA___GCAUCAG_____GACUCAGCUCGA ..(((.(((((((.((.(((((.(((..((((.(((....))))))))))..))))).).).))))))))))............................... (-27.87 = -28.20 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:24 2006