Locus 3074

Sequence ID	X_DroMel_CAF1
Location	8,212,986 – 8,213,100
Length	114
Max. P	0.725325

overview

Window 7

Location	8,212,986 – 8,213,100
Length	114
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	93.60
Mean single sequence MFE	-30.45
Consensus MFE	-27.44
Energy contribution	-27.25
Covariance contribution	-0.19
Combinations/Pair	1.03
Mean z-score	-1.57
Structure conservation index	0.90
SVM decision value	0.41
SVM RNA-class probability	0.725325
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8212986 114 - 22224390
GCUGGCAUAAUUGUGGCUAACUGCGGUUAGCAUUAAUGACUGUCAAUUGCCACUUACCUUAUUGGCUGAAAUAGAUGCGUAAACUUCACUCAGCAG-AUGCUUACCAAAGCAUAA
((((((((....(((((.....(((((((.......))))))).....)))))(((((.....)).))).....))))((.......)).))))..-((((((....)))))).. ( -29.80)
>DroSec_CAF1 114426 114 - 1
GCUGGCGUAAUUGUGGCUAACUGCGGUUAGCAUUAAUGACUGUCAAUUGCCACUUACCUUAUUGGCUGAAAUAGAUGCGUAAACUUCACUCAGCAG-AUGCUCACCAAAGCAUAA
(((((((((...(((((.....(((((((.......))))))).....)))))(((((.....)).)))......)))))..........))))..-(((((......))))).. ( -28.60)
>DroEre_CAF1 104476 114 - 1
GCUGGCGUAAUUGUGGCUUACUGCGGUUAGCAUUAAUGACUGUCAAUAGCCACUUACCUUAUUGGCUGAAAUAGAUGCGUAAGCUUCACUCAGCAG-AUGCUCUCUAGUGCAUAU
(((((.((((..((((((....(((((((.......)))))))....))))))))))..((((.(((((....((.((....)).))..))))).)-)))....)))))...... ( -33.90)
>DroYak_CAF1 105024 115 - 1
GCUGGCGUAAUUGUGGCUAACUGCGGUUAGCAUUAAUGACUGUCAAUUGCCACUUACCUUAUUGGCUGAAUUAGAUGCGUAAACUUCACUCAGCACUAUGCUCUCCCAAGCAUAU
(((((((((...(((((.....(((((((.......))))))).....)))))(((((.....)).)))......)))))..........))))..((((((......)))))). ( -29.50)
>consensus
GCUGGCGUAAUUGUGGCUAACUGCGGUUAGCAUUAAUGACUGUCAAUUGCCACUUACCUUAUUGGCUGAAAUAGAUGCGUAAACUUCACUCAGCAG_AUGCUCACCAAAGCAUAA
((((((((....(((((.....(((((((.......))))))).....)))))(((((.....)).))).....))))((.......)).))))...((((........)))).. (-27.44 = -27.25 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:19 2006