| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,209,142 – 8,209,238 |
| Length | 96 |
| Max. P | 0.843219 |
| Location | 8,209,142 – 8,209,238 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 70.37 |
| Mean single sequence MFE | -14.64 |
| Consensus MFE | -9.67 |
| Energy contribution | -10.33 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.843219 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8209142 96 + 22224390 UCACAGUUCGGGAGCUUUCGUUUGGCCCUUGACUUUUACCAUCCCCCCUCUCCACCCACUGCCAAUCAUCCGCAUUUUCGCUCGACAUUUUCCCC------------------C .........(((((...(((.(((((...((.........................))..)))))......((......)).)))....))))).------------------. ( -11.61) >DroSec_CAF1 110917 96 + 1 UCACAGUUCGGGGGCUUUCAUUUGGCCCUUGACUUUUACCAGCACCCCCCUCUCCCCACUACCAAUCAUCCGCAUUUUCGCUUGACAUUUUCCCC------------------C ....(((.((((((((.......)))))))))))...............................(((...((......)).)))..........------------------. ( -15.40) >DroEre_CAF1 101014 105 + 1 UCACAGGUCGGGG-CUUUCAUUUGGCCCUUGACUUUUCCCCCCAAGCCCUUC--------UCCAACCAUCCGCAUUUUUGCCCAGCAUUUUACCCACUUUGCCACGAUUCUACC ....(((((((((-((.......))))).)))))).................--------...........(((....)))...(((............)))............ ( -16.90) >consensus UCACAGUUCGGGGGCUUUCAUUUGGCCCUUGACUUUUACCACCACCCCCCUC__CCCACUACCAAUCAUCCGCAUUUUCGCUCGACAUUUUCCCC__________________C ....((.(((((((((.......))))))))))).....................................((......))................................. ( -9.67 = -10.33 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:18 2006